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Repository fastq_screen
Name: fastq_screen
Owner: iuc
Synopsis: Wrapper for fastq_screen perl script using bowtie2 to screen for (eg) mycoplasma contamination of sequence
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/iuc/fastq_screen/81a0c1c27ec8
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/iuc/fastq_screen
Type: unrestricted
Revision: 2:81a0c1c27ec8
This revision can be installed: True
Times cloned / installed: 182
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_bowtie2_2_1_0 revision 606d435a57a4 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.1.0 package
fastq_screen 0.4.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Screen for contamination 0.4.2 any

Categories
Fastq Manipulation - Tools for manipulating fastq data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis