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Repository ucsc_blat
Name: ucsc_blat
Owner: yating-l
Synopsis: Standalone blat sequence search command line tool
Content homepage: http://genome.ucsc.edu/goldenPath/help/blatSpec.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_blat/
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/yating-l/ucsc_blat/69e52dbcadf1
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/yating-l/ucsc_blat
Type: unrestricted
Revision: 37:69e52dbcadf1
This revision can be installed: True
Times cloned / installed: 202

Repository README files - may contain important installation or license information

Readme files

Galaxy wrapper for UCSC BLAT alignment tool

BLAT (http://genome.ucsc.edu/goldenPath/help/blatSpec.html) is a bioinformatics software a tool which performs rapid mRNA/DNA and cross-species protein alignments.

Features

  1. Perform rapid mRNA/DNA and cross-species protein alignments using blat
  2. Sort the output file
  3. The output file can be filtered using UCSC pslCDnaFilter

Licence

Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
BLAST-like sequence alignment tool 481+galaxy0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis