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Repository mergegffs
Name: mergegffs
Owner: eduardo
Synopsis: Merge gff using gffutils
Creates a gffutils SQLite database from predicted proteins gff and adds protein annotations from blastp protein matches in outfmt6, tmhmm, signalp and hmmer predictions
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/mergegffs
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/eduardo/mergegffs/5e27f44500d6
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/eduardo/mergegffs
Type: unrestricted
Revision: 14:5e27f44500d6
This revision can be installed: True
Times cloned / installed: 81
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_python_2_7_10 revision a28e3c30828d owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_readline_6_3 revision de22495ddf2b owned by iuc (prior install required)
Repository package_bzlib_1_0 revision 29f79feefc77 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision c9d30f1de10a owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision 9ba893c2353f owned by iuc (prior install required)
Repository package_gdbm_1_11 revision 77ea468f199e owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_numpy_1_9 revision 1e2b7e63dec2 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 35d6b30ef137 owned by iuc (prior install required)
Repository package_python_2_7 revision a03693de8e0c owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_libtool_2_4 revision 5ccfb33b5622 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_readline_6_3 revision de22495ddf2b owned by iuc (prior install required)
Repository package_bzlib_1_0 revision 29f79feefc77 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision c9d30f1de10a owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision 9ba893c2353f owned by iuc (prior install required)
Repository package_gdbm_1_11 revision 77ea468f199e owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_genomegtftools_1_0 revision 02aa5f3a4e68 owned by eduardo (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
biopython 1.66 package
genomegtftools 1.0 package
gffutils 0.8 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
1.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis