hg clone https://testtoolshed.g2.bx.psu.edu/repos/devteam/picard1106
| Name | Version | Type | |
|---|---|---|---|
| picard | 1.106.0 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Merges alignment data from a SAM or BAM file with additional data stored | 1.106.0 | any | |
| Replaces all read groups | 1.106.0 | any | |
| Down-sample a file to retain a subset of the reads | 1.106.2 | any | |
| writes a file containing summary alignment metrics | 1.106.0 | any | |
| Merges multiple VCF files into one VCF file. | 1.106.0 | any | |
| Calculates mean quality by cycle | 1.106.0 | any | |
| creates an unaligned BAM or SAM file | 1.106.0 | any | |
| Sorts SAM or BAM file | 1.106.0 | any | |
| for paired data | 1.106.0 | any | |
| Includes or excludes aligned reads or a list of reads from a BAM or SAM file | 1.106.0 | any | |
| Takes any file that conforms to the fasta format and normalizes it. | 1.106.0 | any | |
| Read SAM and perform various fix-ups. | 1.106.0 | any | |
| merges SAM or BAM files together | 1.106.0 | any | |
| 1.106.0 | any | ||
| for PAIRED data | 1.106.0 | any | |
| 1.106.0 | any | ||
| estimates library complexity from sequence of read pairs alone | 1.106.0 | any | |
| creates a FASTQ file | 1.106.0 | any | |
| Reorders reads in a SAM/BAM file | 1.106.0 | any | |
| locates duplicate molecules | 1.106.0 | any | |