Repository covacs_intersect_snps
Name: covacs_intersect_snps
Owner: elixir-it
Synopsis: tool for snp VCF file intersection
Predictions of SNPs from Varscan2, GATK and Freebayes are consolidated into a single call-set following a simple majority consensus rule. Variants  identified by at least two methods are incorporated into a final “high confidence” call set.Singleton variants predicted by only one method are considered less reliable and are included in a low quality call-set
Development repository: https://github.com/Laniakea-elixir-it/CoVaCS-galaxy-wrappers
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/elixir-it/covacs_intersect_snps/3edc7bb490d3
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/elixir-it/covacs_intersect_snps
Type: unrestricted
Revision: 0:3edc7bb490d3
This revision can be installed: True
Times cloned / installed: 285

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
tool for snp VCF file intersection 0 16.01

Categories
Variant Analysis - Tools for sequence variation data such as WGA and VCF