Cuffquant is part of Cufflinks. Cuffquant allows precalculation of gene expression levels. Output is provided in a binary format.
Please cite: Trapnell C, Williams BA, Pertea G, Mortazavi AM, Kwan G, van Baren MJ, Salzberg SL, Wold B, Pachter L. Transcript assembly and abundance estimation from RNA-Seq reveals thousands of new transcripts and switching among isoforms. Nature Biotechnology doi:10.1038/nbt.1621 |
hg clone https://testtoolshed.g2.bx.psu.edu/repos/geert-vandeweyer/cuffquant_datatype