| Previous changeset 15:08d4ca8bc6dd (2021-03-11) |
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Commit message:
"planemo upload for repository https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper/tree/master commit aaac8e2f8de03c01e5064abf8a2e30020fabe7ca-dirty" |
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added:
test-data/input_med1_dm.tsv test-data/input_med1_sm.tsv test-data/input_med1_vm.tsv |
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removed:
test-data/expected_dataMatrix.tsv test-data/expected_sampleMetadata.tsv test-data/expected_variableMetadata.tsv |
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| diff -r 08d4ca8bc6dd -r c0bb5667f5cd test-data/expected_dataMatrix.tsv --- a/test-data/expected_dataMatrix.tsv Thu Mar 11 20:46:26 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,16 +0,0 @@ - HU_017 HU_034 HU_078 HU_091 HU_093 HU_099 HU_130 HU_134 HU_138 -HMDB00191 560002 575790 785428 645785 591569 960658 639437 1092885 1409045 -HMDB00208 747080 595872 3143654 4059767 1433702 5593888 2477288 3346077 4230072 -HMDB00251 368600 94936 293988 352855 767894 268331 310918 1248919 577184 -HMDB00299 250551 456162 808657 614370 250403 768004 504108 1014041 1362408 -HMDB00512 525240 280560 556003 590779 209285 342532 569970 525240 246282 -HMDB00518 0 85944 129886 175800 13154 230242 440223 315368 10657 -HMDB00715 1252089 905408 5140022 2658555 814523 2558923 4184204 3865723 3236644 -HMDB01032 2569205 1604999 26222916 257139 675754 59906109 31151730 18648127 14989438 -HMDB01101 30689 52217 229568 4763576 3878773 976436 608298 1605075 72021 -HMDB01101.1 6877586 3158 4763576 3878773 976436 831937 1605075 72021 442510 -HMDB03193 76043 44943 173175 242549 57066 559869 339188 471368 262271 -HMDB04824 374028 539206 959381 605191 310260 1253319 477995 825691 1157093 -HMDB10348 47259 60885 168264 176500 76457 610110 279156 524468 451573 -HMDB13189 2644620 1661412 2755434 593863 837865 3526136 1608814 3446611 1941527 -HMDB59717 357351 301983 1028110 1530493 270027 1378535 808334 1132813 871209 |
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| diff -r 08d4ca8bc6dd -r c0bb5667f5cd test-data/expected_sampleMetadata.tsv --- a/test-data/expected_sampleMetadata.tsv Thu Mar 11 20:46:26 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,10 +0,0 @@ -sampleMetadata injectionOrder mode age bmi gender -HU_017 2 pos 41 23.03 M -HU_034 9 pos 52 23.37 M -HU_078 34 pos 46 25.18 M -HU_091 42 pos 61 26.12 M -HU_093 43 pos 53 21.71 M -HU_099 46 pos 23 21.3 M -HU_130 63 pos 33 26.06 M -HU_134 67 pos 48 22.89 M -HU_138 68 pos 42 21.88 M |
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| diff -r 08d4ca8bc6dd -r c0bb5667f5cd test-data/expected_variableMetadata.tsv --- a/test-data/expected_variableMetadata.tsv Thu Mar 11 20:46:26 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,16 +0,0 @@ -variableMetadata name mz rt -HMDB00191 loquor 650 600 -HMDB00208 loquimini 873 476 -HMDB00251 pasamur 500 423 -HMDB00299 bantur 700 500 -HMDB00512 pantur 900 543 -HMDB00518 loquoris 870 250 -HMDB00715 loquitur 725 900 -HMDB01032 loquimur 550 425 -HMDB01101 bar 150 300 -HMDB01101.1 baz 200 225 -HMDB03193 foo 100 200 -HMDB04824 loquantur 950 522 -HMDB10348 batur 300 275 -HMDB13189 baris 800 325 -HMDB59717 bamur 125 400 |
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| diff -r 08d4ca8bc6dd -r c0bb5667f5cd test-data/input_med1_dm.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input_med1_dm.tsv Thu Mar 11 21:14:05 2021 +0000 |
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| @@ -0,0 +1,10 @@ +X M70T1043 M70T61 M71T138 M71T1041 M71T377 M71T369 M71T364 M71T555 M71T581 M72T34_1 M72T54 M72T34_3 M73T1061 M73T1044 M73T32_1 M73T1096 M73T32_2 M73T1043 M74T1042_1 M74T33 M74T871 M74T876_2 M74T858 M74T34 M74T1033 M75T34 M75T505 M75T431 M76T1040 M77T537 +trtA_1 0 0 0.103676462792297 0 0 0 0.09826970333995 0 0 0 0.0303803032193031 0 0.00180737321564983 0.174619941309 0 0 0 0 0 0 0 0 0 0 0.219609447733449 0 0 0 0.0151151439275008 0.502704391270598 +trtA_2 0.1499611203546 0.243708505613103 0 0.04320144565955 0.0317311746973008 0.171306020866901 0 1.0677832262992 0.4890197262973 0.140208039060401 0.00253982134690034 0.0563798353136988 0 0.00346576229545015 0.0285671029685997 0.0256247716491007 0.818318427514498 0.2150061358386 0.1234949545399 0.0398841868243505 0 0.7407933477417 0 0.0476545410972502 0 0.112811564993098 0 0 0 0.251352195635299 +trtA_3 0.0424174908139001 0.121854252806552 0.0518382313961485 0.0864028913191 0.1222967572165 0.342612041733801 0.849339292282099 0.0147975909652498 3.869505334958 0.285443289823299 0 0.112759670627398 0.0300457862235994 0 0.6387333497781 0.411653240176999 0.0933267742982 0.0514902142761002 0.0463451483315485 0.183561229851001 0.528508602842599 0 0.1934182113026 0.420661197739499 0.439218895466897 0.0175408561815491 0 0 0.1265423906184 0 +trtB_1 0 0 0 0 0 1.5113745967984 0.1965394066799 0.0295951819304996 0 0.280416078120801 0.00507964269380068 0 0 0.00346576229545015 0 0.0256247716491007 0.0933267742982 0 0.0463451483315485 0.2933301023069 0 0 0 0.935782704287199 0.219609447733449 0.0175408561815491 0 0 0.0151151439275008 0.251352195635299 +trtB_2 0.124637442941602 0.414790130357598 0.140388243320103 0.357735292121102 0.0634623493946016 0 0 0 0.978039452594601 0.140208039060401 0 0.0563798353136988 0.220593700553497 0.0767204072380991 0.0571342059371993 0.0815161028168028 0.446741706469403 0.0514902142761002 0 0.0398841868243505 0 0 0 0.0476545410972502 0.761398854361399 0 1.086467693902 0 0 0.580225894218799 +trtB_3 0.0424174908139001 0.121854252806552 0.0518382313961485 0.04320144565955 0.0317311746973008 0.171306020866901 0.09826970333995 0.0147975909652498 0.4890197262973 0 0.00253982134690034 0.2357122484906 0.00180737321564983 0 0.0285671029685997 0 0 0.1029804285522 0.204744259308601 0 0 0 0 0 0 0.0422615246151992 0 0 0.2218306650343 0 +trtC_1 0 0.320143072543999 0.0518382313961485 0.7011594009854 1.9883459973714 1.8589982127458 1.1443146127588 0.269349110340201 1.2385296023128 0 0.730941378584301 0.640778164724498 0 0.0069315245909003 0.125735401747001 0.0512495432982014 0 0 0 0 0.0667424385274984 0.268514070203597 0.752261526391599 0 0.679179854411199 0.0175408561815491 0 0 0.0302302878550016 0.754715219586299 +trtC_2 0.0848349816278002 0.121854252806552 0.244624610443701 0 0 0 0 0 0.4890197262973 0.513858474098299 0 0.0563798353136988 0.00180737321564983 0.00346576229545015 0.0285671029685997 0.0256247716491007 0.1866535485964 0.3576876580278 0.0926902966630969 0.0797683736487009 0 0 0 0.0953090821945004 0 0.0350817123630982 0 1.900985710853 0.0151151439275008 0.251352195635299 +trtC_3 0.0424174908139001 0 0 0.04320144565955 0.0317311746973008 0.171306020866901 0.09826970333995 0.0147975909652498 0 0.140208039060401 0.00253982134690034 0 0.00361474643129966 0 0 0 0.0933267742982 0.0514902142761002 0.0463451483315485 0.0398841868243505 0 0 0 0.0476545410972502 0.219609447733449 0 0 0 0 0 |
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| diff -r 08d4ca8bc6dd -r c0bb5667f5cd test-data/input_med1_sm.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input_med1_sm.tsv Thu Mar 11 21:14:05 2021 +0000 |
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| @@ -0,0 +1,31 @@ +sampleMetadata pcgroup mz rt +M70T1043 10 70.0122929793033 1042.83709612962 +M70T61 183 70.0651210994061 61.3905354181062 +M71T138 134 70.7378907468715 137.798948287145 +M71T1041 89 70.9909558511769 1041.40508992281 +M71T377 35 71.0488173286188 376.931518857336 +M71T369 27 71.0488456490549 368.759546615083 +M71T364 45 71.0488487473802 364.081506343325 +M71T555 37 71.0489644640144 555.004553220191 +M71T581 44 71.0490430805114 581.198136872667 +M72T34_1 345 71.529455784918 33.7387759459325 +M72T54 353 72.0807228513553 54.4048259006589 +M72T34_3 345 72.0807426611777 33.8672738618788 +M73T1061 8 72.9367161649113 1060.80034606296 +M73T1044 10 72.9367229345106 1043.98726790638 +M73T32_1 85 72.9368652358215 31.7025769021219 +M73T1096 160 72.936874804031 1095.52504027727 +M73T32_2 85 73.0647299005977 32.166230277174 +M73T1043 10 73.1056566280053 1042.8817438948 +M74T1042_1 10 73.531470577532 1042.13833094273 +M74T33 345 73.5315669737491 33.3902011282139 +M74T871 29 73.7524028205993 871.313876430572 +M74T876_2 28 73.7524067558588 876.27549665073 +M74T858 80 73.7524235616046 858.00252803859 +M74T34 345 74.0319853847452 33.6736778224506 +M74T1033 231 74.0963050198453 1033.01869720333 +M75T34 345 74.5303776078914 33.8541677395798 +M75T505 26 74.5552304268754 505.059650753422 +M75T431 1 75.0246219750883 431.003601360729 +M76T1040 89 76.0391694122706 1039.93848585356 +M77T537 50 76.9819350151329 536.652145428441 |
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| diff -r 08d4ca8bc6dd -r c0bb5667f5cd test-data/input_med1_vm.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input_med1_vm.tsv Thu Mar 11 21:14:05 2021 +0000 |
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| @@ -0,0 +1,10 @@ +variableMetadata sample trt +trtA_1 trtA_1 A +trtA_2 trtA_2 A +trtA_3 trtA_3 A +trtB_1 trtB_1 B +trtB_2 trtB_2 B +trtB_3 trtB_3 B +trtC_1 trtC_1 C +trtC_2 trtC_2 C +trtC_3 trtC_3 C |