Previous changeset 10:957b847eaed6 (2013-06-12) Next changeset 12:65a97686ca5d (2013-06-12) |
Commit message:
Uploaded |
modified:
rgedgeR/tool_dependencies.xml |
b |
diff -r 957b847eaed6 -r c788c8078338 rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Wed Jun 12 04:21:33 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 05:11:51 2013 -0400 |
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@@ -13,7 +13,7 @@ </repository> </action> <action type="make_directory">$INSTALL_DIR</action> - <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib --with-readline=no --with-x=no --prefix=$INSTALL_DIR && make && make install</action> + <action type="shell_command">./configure --with-blas --with-lapack --enable-R-shlib --with-x=no --prefix=$INSTALL_DIR && make && make install</action> <action type="set_environment"> <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> @@ -30,7 +30,10 @@ <package name="package_BioCBasics" version="2.12"> <install version="1.0"> <actions> - <action type="shell_command">$INSTALL_DIR/lib/R/bin/R CMD BATCH installBioC.R </action> + <action type="set_environment_for_install"> + + </action> + <action type="shell_command">$R_HOME/bin/R CMD BATCH installBioC.R </action> </actions> </install> <readme>R is a free software environment for statistical computing and graphics |