Repository 'edger_test'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/fubar/edger_test

Changeset 33:bddbc76bce5d (2013-06-12)
Previous changeset 32:f18d9aedcf58 (2013-06-12) Next changeset 34:0e69aefbbfa4 (2013-06-12)
Commit message:
Uploaded
modified:
rgedgeR/tool_dependencies.xml
b
diff -r f18d9aedcf58 -r bddbc76bce5d rgedgeR/tool_dependencies.xml
--- a/rgedgeR/tool_dependencies.xml Wed Jun 12 23:36:20 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 23:51:30 2013 -0400
b
@@ -11,7 +11,7 @@
                         <package name="r3" version="3.0.1" />
                     </repository>
                 </action>
-                <action type="shell_command">R CMD BATCH installBioC.R </action>
+                <action type="shell_command">R CMD BATCH $INSTALL_DIR/installBioC.R </action>
             </actions>
         </install>
         <readme>Installs some basic bioc packages for the edgeR tool