Previous changeset 34:0e69aefbbfa4 (2013-06-12) Next changeset 36:46c91da1351e (2013-06-13) |
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modified:
rgedgeR/tool_dependencies.xml |
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diff -r 0e69aefbbfa4 -r bbc8a94b5311 rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Wed Jun 12 23:55:21 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 23:58:04 2013 -0400 |
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@@ -1,5 +1,8 @@ <?xml version="1.0"?> <tool_dependency> + <set_environment version="1.0"> + <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> <package name="package_r3" version="3.0.1"> <repository changeset_revision="addf8c9c778a" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> @@ -11,7 +14,7 @@ <package name="r3" version="3.0.1" /> </repository> </action> - <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/installBioC.R </action> + <action type="shell_command">R CMD BATCH $R_SCRIPT_PATH/installBioC.R </action> </actions> </install> <readme>Installs some basic bioc packages for the edgeR tool |