| Previous changeset 39:d110c5bb0ad3 (2013-06-13) Next changeset 41:4afd763390e6 (2013-06-13) |
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modified:
rgedgeR/tool_dependencies.xml |
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| diff -r d110c5bb0ad3 -r 5c211b875782 rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Thu Jun 13 01:36:22 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Thu Jun 13 01:41:21 2013 -0400 |
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| @@ -12,10 +12,12 @@ </repository> </action> <action type="make_directory">$INSTALL_DIR</action> - <action type="shell_command">echo source('http://bioconductor.org/biocLite.R') > $INSTALL_DIR/runme.R</action> - <action type="shell_command">echo installme=c('edgeR','limma','DESeq','DEXSeq','ggplot2','gplots') >> $INSTALL_DIR/runme.R</action> - <action type="shell_command">echo biocLite() >> $INSTALL_DIR/runme.R</action> - <action type="shell_command">echo biocLite(installme) >> $INSTALL_DIR/runme.R</action> + <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> + <action type="shell_command">echo "installme=c('edgeR','limma','DESeq','DEXSeq','ggplot2','gplots')" >> $INSTALL_DIR/runme.R</action> + <action type="shell_command">echo "biocLite()" >> $INSTALL_DIR/runme.R</action> + <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> + <action type="shell_command">echo "quit(save='no')" >> $INSTALL_DIR/runme.R</action> + <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> </actions> </install> |