Previous changeset 43:1212dc390f4f (2013-06-17) Next changeset 45:99e16f6d0bc8 (2013-07-08) |
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rgedgeR/tool_dependencies.xml |
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diff -r 1212dc390f4f -r 590068a0c820 rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Mon Jun 17 04:40:18 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Mon Jul 08 03:38:19 2013 -0400 |
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@@ -1,13 +1,15 @@ <?xml version="1.0"?> <tool_dependency> - <package name="package_r3" version="3.0.1"> - <repository changeset_revision="6344ee60d0cf" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <!-- swap to bjorn gruening's much better R 3.0 package. Especially now that altas doesn't shrug on my laptop :) --> + <package name="package_r_3_0_1" version="3.0.1"> + http://testtoolshed.g2.bx.psu.edu/view/bgruening/package_r_3_0_1 + <repository changeset_revision="1d5580f2ece0" name="package_r_3_0_1" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="biocbasics" version="2.12"> <install version="1.0"> <actions> <action type="set_environment_for_install"> - <repository changeset_revision="6344ee60d0cf" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <repository changeset_revision="1d5580f2ece0" name="package_r_3_0_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="r3" version="3.0.1" /> </repository> </action> @@ -23,7 +25,9 @@ </actions> </install> <readme>Installs some basic bioc packages for the edgeR wrapper - It's clunky but this is the only way I could get anything installed into the package_r3 R + It's clunky but this is seems to install bioc things in package_r3 R + There are more dependencies like xml2lib and curl - if not in buildessentials that probably belong in the R package installer + Send code. </readme> </package> </tool_dependency> |