Previous changeset 51:773b5051159e (2013-07-26) Next changeset 53:9cbc5a72fc3f (2013-07-26) |
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rgedgeR/tool_dependencies.xml |
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diff -r 773b5051159e -r 58bca54fa26b rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Fri Jul 26 22:49:53 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Fri Jul 26 23:35:07 2013 -0400 |
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@@ -1,13 +1,13 @@ <?xml version="1.0"?> <tool_dependency> <package name="r3" version="3.0.1"> - <repository changeset_revision="1ffaf8412079" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <repository changeset_revision="bf7e8f4749b4" name="package_r3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="biocbasics" version="2.12"> <install version="1.0"> <actions> <action type="set_environment_for_install"> - <repository changeset_revision="1ffaf8412079" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <repository changeset_revision="bf7e8f4749b4" name="package_r3" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/"> <package name="r3" version="3.0.1" /> </repository> </action> @@ -18,7 +18,7 @@ <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T)" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "quit(save='no')" >> $INSTALL_DIR/runme.R</action> - <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> + <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> </actions> </install> <readme>Installs some basic bioc packages for the edgeR wrapper |