| Previous changeset 17:13b7fdf4cba9 (2013-06-12) Next changeset 19:0d6a14ee7c81 (2013-06-12) |
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rgedgeR/tool_dependencies.xml |
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| diff -r 13b7fdf4cba9 -r 3f316c8adf4c rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Wed Jun 12 07:44:46 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 08:17:26 2013 -0400 |
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| @@ -4,12 +4,12 @@ <install version="1.0"> <actions> <action type="set_environment_for_install"> - <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> - <set_environment toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.0"> - <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> - </set_environment> + <package name="R3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1"> + <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/> + </package> + </action> - <action type="shell_command">R CMD BATCH installBioC.R </action> + <action type="shell_command">$R_HOME/R CMD BATCH installBioC.R </action> </actions> </install> <readme>R is a free software environment for statistical computing and graphics |