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rgedgeR/tool_dependencies.xml |
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diff -r a4d7ec124c53 -r 1eb7a4834c1a rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Wed Jun 12 06:17:03 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 06:30:55 2013 -0400 |
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@@ -1,12 +1,15 @@ <?xml version="1.0"?> <tool_dependency> + <set_environment version="1.0"> + <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> <package name="package_BioCBasics" version="2.12"> <install version="1.0"> <actions> <action type="set_environment_for_install"> <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/> </action> - <action type="shell_command">$R_HOME/bin/R CMD BATCH installBioC.R </action> + <action type="shell_command">$R3_BINARY/R CMD BATCH $R_SCRIPT_PATH/installBioC.R </action> </actions> </install> <readme>R is a free software environment for statistical computing and graphics |