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rgedgeR/tool_dependencies.xml |
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| diff -r d28ce4e0e3af -r 13b7fdf4cba9 rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Wed Jun 12 06:33:34 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 07:44:46 2013 -0400 |
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| @@ -1,15 +1,15 @@ <?xml version="1.0"?> <tool_dependency> - <set_environment version="1.0"> - <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> - </set_environment> <package name="package_BioCBasics" version="2.12"> <install version="1.0"> <actions> <action type="set_environment_for_install"> - <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/> + <repository name="package_R3" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <set_environment toolshed="http://testtoolshed.g2.bx.psu.edu" version="1.0"> + <environment_variable action="set_to" name="R_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> </action> - <action type="shell_command">$R3_BINARY/R CMD BATCH $R_SCRIPT_PATH/installBioC.R </action> + <action type="shell_command">R CMD BATCH installBioC.R </action> </actions> </install> <readme>R is a free software environment for statistical computing and graphics |