| Previous changeset 42:697272b8ef42 (2013-06-15) Next changeset 44:590068a0c820 (2013-07-08) |
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Commit message:
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modified:
rgedgeR/tool_dependencies.xml |
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| diff -r 697272b8ef42 -r 1212dc390f4f rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Sat Jun 15 03:49:46 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Mon Jun 17 04:40:18 2013 -0400 |
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| @@ -17,8 +17,10 @@ <action type="shell_command">echo "biocLite()" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "quit(save='no')" >> $INSTALL_DIR/runme.R</action> - <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> - </actions> + <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && + R CMD BATCH $INSTALL_DIR/runme.R > $INSTALL_DIR/install.log </action> + <action type="shell_command">cat $INSTALL_DIR/install.log</action> + </actions> </install> <readme>Installs some basic bioc packages for the edgeR wrapper It's clunky but this is the only way I could get anything installed into the package_r3 R |