Previous changeset 18:3f316c8adf4c (2013-06-12) Next changeset 20:3b3066dea1a7 (2013-06-12) |
Commit message:
Uploaded |
modified:
rgedgeR/rgedgeRpaired.xml rgedgeR/tool_dependencies.xml |
b |
diff -r 3f316c8adf4c -r 0d6a14ee7c81 rgedgeR/rgedgeRpaired.xml --- a/rgedgeR/rgedgeRpaired.xml Wed Jun 12 08:17:26 2013 -0400 +++ b/rgedgeR/rgedgeRpaired.xml Wed Jun 12 08:37:25 2013 -0400 |
b |
@@ -1,9 +1,8 @@ <tool id="rgedgeRpaired" name="edgeR" version="0.18"> <description>1 or 2 level models for count data</description> <requirements> - <requirement type="package" version="3.0.1">package_R3</requirement> + <requirement type="package" version="3.0.1">R3</requirement> <requirement type="package" version="2.12">package_BioCBasics</requirement> - <requirement type="set_environment">R_SCRIPT_PATH</requirement> </requirements> <command interpreter="python"> |
b |
diff -r 3f316c8adf4c -r 0d6a14ee7c81 rgedgeR/tool_dependencies.xml --- a/rgedgeR/tool_dependencies.xml Wed Jun 12 08:17:26 2013 -0400 +++ b/rgedgeR/tool_dependencies.xml Wed Jun 12 08:37:25 2013 -0400 |
b |
@@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="package_BioCBasics" version="2.12"> - <install version="1.0"> + <install version="1.0"> <actions> <action type="set_environment_for_install"> <package name="R3" toolshed="http://testtoolshed.g2.bx.psu.edu" version="3.0.1"> @@ -12,10 +12,8 @@ <action type="shell_command">$R_HOME/R CMD BATCH installBioC.R </action> </actions> </install> - <readme>R is a free software environment for statistical computing and graphics - WARNING: See custom compilation options above - Modified from an older version of R by Boris by Ross Lazarus for R 3.0 - Added Bioc basics via this package installBioC.R script + <readme>Installs some basic bioc packages for the edgeR tool + </readme> </package> </tool_dependency> |