| Previous changeset 21:5e2bb75817e2 (2017-09-15) Next changeset 23:38a03cb41fba (2019-02-22) |
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Commit message:
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty |
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modified:
tools/align_back_trans/align_back_trans.py tools/align_back_trans/align_back_trans.xml |
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| diff -r 5e2bb75817e2 -r 8e60cb66f032 tools/align_back_trans/align_back_trans.py --- a/tools/align_back_trans/align_back_trans.py Fri Sep 15 10:21:00 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.py Fri Nov 09 10:44:00 2018 -0500 |
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| @@ -1,5 +1,5 @@ #!/usr/bin/env python -"""Back-translate a protein alignment to nucleotides +"""Back-translate a protein alignment to nucleotides. This tool is a short Python script (using Biopython library functions) to load a protein alignment, and matching nucleotide FASTA file of unaligned @@ -35,7 +35,7 @@ def check_trans(identifier, nuc, prot, table): - """Returns nucleotide sequence if works (can remove trailing stop)""" + """Return nucleotide sequence, if works (can remove trailing stop).""" if len(nuc) % 3: sys.exit("Nucleotide sequence for %s is length %i (not a multiple of three)" % (identifier, len(nuc))) |
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| diff -r 5e2bb75817e2 -r 8e60cb66f032 tools/align_back_trans/align_back_trans.xml --- a/tools/align_back_trans/align_back_trans.xml Fri Sep 15 10:21:00 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.xml Fri Nov 09 10:44:00 2018 -0500 |
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| @@ -123,7 +123,7 @@ Cock et al (2009). Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This tool is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/align_back_trans |