| Previous changeset 9:816d3480b0b1 (2015-10-09) Next changeset 11:fc6f5ca8aef3 (2015-12-22) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 97a064489364118d108b0dd2cfb4d9bc53080837 |
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modified:
tool_dependencies.xml |
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| diff -r 816d3480b0b1 -r f9289486f06d tool_dependencies.xml --- a/tool_dependencies.xml Fri Oct 09 05:09:17 2015 -0400 +++ b/tool_dependencies.xml Thu Nov 19 13:46:53 2015 -0500 |
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| @@ -1,33 +1,35 @@ <?xml version="1.0"?> <tool_dependency> - <package name="atlas" version="3.10.2"> - <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="numpy" version="1.9"> - <install version="1.0"> - <actions> - <action md5sum="a1ed53432dbcd256398898d35bc8e645" type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.2.tar.gz</action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="set_environment_for_install"> - <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="atlas" version="3.10.2" /> - </repository> - </action> - <action type="shell_command"> - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && - export ATLAS=$ATLAS_ROOT_PATH && - python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin - </action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> - <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable> - <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> - </package> + <package name="atlas" version="3.10.2"> + <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="python" version="2.7"> + <repository changeset_revision="9cdf46934080" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="numpy" version="1.9"> + <install version="1.0"> + <actions> + <action type="set_environment_for_install"> + <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="atlas" version="3.10.2" /> + </repository> + </action> + <action type="setup_python_environment"> + <repository changeset_revision="9cdf46934080" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="python" version="2.7" /> + </repository> + <package md5sum="78842b73560ec378142665e712ae4ad9">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> + </package> </tool_dependency> |