| Previous changeset 6:287f4e1318e5 (2015-05-17) Next changeset 8:43cb426cb05d (2015-05-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 90f0980ded867989e4e3696170d3a2a373aa3197 |
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modified:
tool_dependencies.xml |
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| diff -r 287f4e1318e5 -r 54d5b8add0a8 tool_dependencies.xml --- a/tool_dependencies.xml Sun May 17 14:46:20 2015 -0400 +++ b/tool_dependencies.xml Sun May 17 22:38:33 2015 -0400 |
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| @@ -1,25 +1,22 @@ <?xml version="1.0"?> <tool_dependency> - <package name="atlas" version="3.10.2"> - <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="python" version="2.7"> - <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> + <package name="atlas" version="3.10.2"> + <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> <package name="numpy" version="1.9"> <install version="1.0"> <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5=510cee1c6a131e0a9eb759aa2cc62609</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="set_environment_for_install"> <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="atlas" version="3.10.2" /> </repository> </action> - <action type="setup_python_environment"> - <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="python" version="2.7" /> - </repository> - <!-- allow downloading and installing an Python package from https://pypi.org/ --> - <package>https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + export ATLAS=$ATLAS_ROOT_PATH && + python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> @@ -27,7 +24,6 @@ <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable> </action> </actions> </install> |