Repository 'data_manager_build_kraken2_database'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/dfornika/data_manager_build_kraken2_database

Changeset 50:df30afab73fa (2019-05-03)
Previous changeset 49:2180fe4e7dba (2019-05-03) Next changeset 51:2fd3ebc4fcf3 (2019-05-03)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 558493454e620f1d7c628fd604de1f46c1b50ebc-dirty
modified:
data_manager/kraken2_build_database.xml
b
diff -r 2180fe4e7dba -r df30afab73fa data_manager/kraken2_build_database.xml
--- a/data_manager/kraken2_build_database.xml Fri May 03 18:48:04 2019 -0400
+++ b/data_manager/kraken2_build_database.xml Fri May 03 18:52:15 2019 -0400
b
@@ -24,6 +24,12 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
+          #else if $database_type.database_type == "special"
+            --threads \${GALAXY_SLOTS:-1}
+            --special-database-type ${database_type.special_database_type}
+            --kmer-len ${database_type.kmer_len}
+            --minimizer-len ${database_type.minimizer_len}
+            --minimizer-spaces ${database_type.minimizer_spaces}
           #end if
     ]]>
     </command>