Galaxy | (sandbox for testing) |

Changeset 11:6736d495130e (2019-02-28)

Previous changeset 10:7cea257d1e77 (2019-02-28) Next changeset 12:412d72bbd9e6 (2019-02-28)

Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 682a16af9bce01ff23176dbce291034d67947e58-dirty

modified:
data_manager/kraken2_build_standard.py

diff -r 7cea257d1e77 -r 6736d495130e data_manager/kraken2_build_standard.py
--- a/data_manager/kraken2_build_standard.py Thu Feb 28 01:24:15 2019 -0500
+++ b/data_manager/kraken2_build_standard.py Thu Feb 28 01:27:28 2019 -0500

[

@@ -5,13 +5,13 @@
import argparse
import datetime
import errno
+import json
import os
import string
import subprocess
import sys

-from json import dumps, loads
-
+from pprint import pprint

DATA_TABLE_NAME = "kraken2_databases"

@@ -58,6 +58,7 @@
     args = parser.parse_args()

     params = json.loads(open(args.params).read())
+    pprint(params)
     target_directory = params['output_data'][0]['extra_files_path']

     try: