Previous changeset 85:7316cb684753 (2021-11-05) |
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit bded7bac774cdcf890076c055f72a48710ce638b-dirty" |
modified:
data_manager/kraken2_build_database.py |
b |
diff -r 7316cb684753 -r 07790b77b3c7 data_manager/kraken2_build_database.py --- a/data_manager/kraken2_build_database.py Fri Nov 05 22:45:02 2021 +0000 +++ b/data_manager/kraken2_build_database.py Fri Nov 05 22:51:43 2021 +0000 |
[ |
@@ -151,12 +151,11 @@ standard_prebuilt_size_url = size_to_url_str[standard_prebuilt_size] # download the pre-built database try: - src = urlopen( - 'https://genome-idx.s3.amazonaws.com/kraken/k2_standard%s_%s.tar.gz' - % (standard_prebuilt_size_url, date_url_str) - ) + download_url = 'https://genome-idx.s3.amazonaws.com/kraken/k2_standard%s_%s.tar.gz' % (standard_prebuilt_size_url, date_url_str) + src = urlopen(download_url) except URLError as e: - print(e, sys.stderr) + print('url: ' + download_url, file=sys.stderr) + print(e, file=sys.stderr) exit(1) with open('tmp_data.tar.gz', 'wb') as dst: @@ -205,12 +204,11 @@ # download the minikraken2 data try: - src = urlopen( - 'https://genome-idx.s3.amazonaws.com/kraken/minikraken2_%s_8GB_201904.tgz' - % minikraken2_version - ) + download_url = 'https://genome-idx.s3.amazonaws.com/kraken/minikraken2_%s_8GB_201904.tgz' % minikraken2_version + src = urlopen(download_url) except URLError as e: - print(e, sys.stderr) + print('url: ' + download_url, file=sys.stderr) + print(e, file=sys.stderr) exit(1) with open('tmp_data.tar.gz', 'wb') as dst: |