| Previous changeset 70:e4291e5a03c1 (2014-02-18) Next changeset 72:a83f8effff05 (2014-02-18) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
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| diff -r e4291e5a03c1 -r f33aac17f15d tool_dependencies.xml --- a/tool_dependencies.xml Tue Feb 18 01:07:24 2014 -0500 +++ b/tool_dependencies.xml Tue Feb 18 01:12:00 2014 -0500 |
| b |
| @@ -24,8 +24,8 @@ <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "quit(save='no')" >> $INSTALL_DIR/runme.R</action> - <action type="shell_command" /> - <action type="shell_command"> export PATH=$PATH && echo "PATH=$PATH" && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> + <action type="shell_command"> echo "PATH=$PATH"</action> + <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD BATCH $INSTALL_DIR/runme.R </action> </actions> </install> <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs |