| Previous changeset 5:9d46c9ca7ceb (2015-11-23) Next changeset 7:bf7478987a6d (2015-11-23) |
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Commit message:
planemo upload commit 022984f323d3da44f70b3bf79c684cfd8dda3f61-dirty |
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modified:
make_families.xml tool_dependencies.xml |
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| diff -r 9d46c9ca7ceb -r e9f9b1d1c6fb make_families.xml --- a/make_families.xml Mon Nov 23 18:46:22 2015 -0500 +++ b/make_families.xml Mon Nov 23 19:01:06 2015 -0500 |
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| @@ -3,9 +3,9 @@ <description>from duplex sequencing data</description> <requirements> <requirement type="package" version="0.1">duplex</requirement> - <!-- <requirement type="set_environment">DUPLEX_DIR</requirement> --> + <requirement type="set_environment">DUPLEX_DIR</requirement> </requirements> - <command>paste $fastq1 $fastq2 + <command>echo "\$DUPLEX_DIR" >&2 && paste $fastq1 $fastq2 | paste - - - - | awk -f \$DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant | sort |
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| diff -r 9d46c9ca7ceb -r e9f9b1d1c6fb tool_dependencies.xml --- a/tool_dependencies.xml Mon Nov 23 18:46:22 2015 -0500 +++ b/tool_dependencies.xml Mon Nov 23 19:01:06 2015 -0500 |
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| @@ -8,17 +8,9 @@ <actions> <action type="download_by_url">https://github.com/makrutenko/duplex/archive/master.tar.gz</action> <action type="shell_command">make</action> - <action type="move_file"> - <source>*.so</source> - <destination>$INSTALL_DIR</destination> - </action> - <action type="move_file"> - <source>*.py</source> - <destination>$INSTALL_DIR</destination> - </action> - <action type="move_file"> - <source>*.awk</source> - <destination>$INSTALL_DIR</destination> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable action="set_to" name="DUPLEX_DIR">$INSTALL_DIR</environment_variable> |