Repository 'khmer'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/crusoe/khmer

Changeset 22:e49de8a4c2bf (2014-06-29)
Previous changeset 21:bc8b334e8f00 (2014-06-29) Next changeset 23:76446fd9f616 (2014-06-29)
Commit message:
more tests
modified:
abundance-dist.xml
b
diff -r bc8b334e8f00 -r e49de8a4c2bf abundance-dist.xml
--- a/abundance-dist.xml Sun Jun 29 12:30:34 2014 -0400
+++ b/abundance-dist.xml Sun Jun 29 12:41:34 2014 -0400
[
@@ -35,20 +35,31 @@
  level="fatal" />
  </stdio>
     
-    <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
-    <tests>
-        <!-- [HELP] Test files have to be in the ~/test-data directory
-        <test>
-            <param name="input" value="input_test.tab" />
-            <param name="int"   value="10" />
-            <output name="output" file="output_test.txt" />
- </test> -->
-        <!-- [HELP] Multiple tests can be defined with different parameters -->
-<!--
-        <test>
-        </test>
--->
-    </tests>
+ <tests>
+ <test>
+                     <param name="input_sequence_filename" value="test-abund-read-2.fa" />
+ <param name="input_counting_table_filename" value="test-abund-read-2.ct" />
+ <param name="no_zero" value="false" />
+                     <output name="output_histogram_filename">
+ <assert_contents>
+ <has_text text="1 96 96 0.98" />
+ <has_text text="1001 2 98 1.0" />
+ </assert_contents>
+ </output>
+ </test>
+ <test>
+                     <param name="input_sequence_filename" value="test-abund-read-2.fa" />
+  <param name="input_counting_table_filename" value="test-abund-read-2.ct" />
+                  <param name="no_zero" value="false" />
+                     <param name="no_bigcount" value="false" />
+                     <output name="output_histogram_filename">
+                             <assert_contents>
+                                     <has_text text="1 96 96 0.98" />
+                                     <has_text text="255 2 98 1.0" />
+                             </assert_contents>
+                     </output>
+             </test>
+     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
     <!--