| Previous changeset 12:cb25a70933ea (2017-09-15) |
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Commit message:
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/workflows/secreted_protein_workflow commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty |
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README.rst repository_dependencies.xml |
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| diff -r cb25a70933ea -r d3468f9cab71 README.rst --- a/README.rst Fri Sep 15 10:33:12 2017 -0400 +++ b/README.rst Fri Nov 09 11:16:44 2018 -0500 |
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| @@ -56,16 +56,16 @@ Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PeerJ 1:e167 -http://dx.doi.org/10.7717/peerj.167 +https://doi.org/10.7717/peerj.167 Bendtsen, J.D., Nielsen, H., von Heijne, G., Brunak, S. (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783–95. -http://dx.doi.org/10.1016/j.jmb.2004.05.028 +https://doi.org/10.1016/j.jmb.2004.05.028 Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567- 580. -http://dx.doi.org/10.1006/jmbi.2000.4315 +https://doi.org/10.1006/jmbi.2000.4315 Additional References @@ -74,13 +74,13 @@ Kikuchi, T., Cotton, J.A., Dalzell, J.J., Hasegawa. K., et al. (2011) Genomic insights into the origin of parasitism in the emerging plant pathogen *Bursaphelenchus xylophilus*. PLoS Pathog 7: e1002219. -http://dx.doi.org/10.1371/journal.ppat.1002219 +https://doi.org/10.1371/journal.ppat.1002219 Jones, J.T., Kumar, A., Pylypenko, L.A., Thirugnanasambandam, A., et al. (2009) Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode *Globodera pallida*. Mol Plant Pathol 10: 815–28. -http://dx.doi.org/10.1111/j.1364-3703.2009.00585.x +https://doi.org/10.1111/j.1364-3703.2009.00585.x Dependencies |
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| diff -r cb25a70933ea -r d3468f9cab71 repository_dependencies.xml --- a/repository_dependencies.xml Fri Sep 15 10:33:12 2017 -0400 +++ b/repository_dependencies.xml Fri Nov 09 11:16:44 2018 -0500 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <repositories description="This requires my SignalP and TMHMM wrapers, and my FASTA filtering tool."> <!-- Revision 15:6abd809cefdd on the main tool shed is v0.2.4, the current latest - but older should be OK --> - <repository changeset_revision="3cb02adf4326" name="tmhmm_and_signalp" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="3c9bbbc6cbbe" name="tmhmm_and_signalp" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> <!-- Revision 2:abdd608c869b on the main tool shed is v0.0.5, the current latest - but older should be OK --> - <repository changeset_revision="735dfff31c1d" name="seq_filter_by_id" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="bc608928a007" name="seq_filter_by_id" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </repositories> |