| Previous changeset 31:00a6437ee54b (2014-06-29) Next changeset 33:d067ee282412 (2014-06-29) |
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Commit message:
Another test for diginorm |
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modified:
normalize-by-median.xml |
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added:
test-data/test-abund-read-paired.fa |
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| diff -r 00a6437ee54b -r ceedaa33286e normalize-by-median.xml --- a/normalize-by-median.xml Sun Jun 29 17:30:43 2014 -0400 +++ b/normalize-by-median.xml Sun Jun 29 17:35:17 2014 -0400 |
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| @@ -158,6 +158,20 @@ </discover_dataset> </output> </test> + <test> + <param name="inputs" value="test-abund-read-paired.fa" /> + <param name="cutoff" value="1" /> + <param name="ksize" value="17" /> + <param name="paired" value="true" /> + <output name="output"> + <discover_dataset name="test-abund-read-paired.fa.keep"> + <assert_contents> + <has_line_matching expression="GGTTGACGGGGCTCAGGGGG" /> + <has_line_matching expression="GGTTGACGGGGCTCAGGG" /> + </assert_contents> + </discover_dataset> + </output> + </test> </tests> |
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| diff -r 00a6437ee54b -r ceedaa33286e test-data/test-abund-read-paired.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-abund-read-paired.fa Sun Jun 29 17:35:17 2014 -0400 |
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| @@ -0,0 +1,12 @@ +>895:1:37:17593:9954/1 +GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG +>895:1:37:17593:9954/2 +GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG +>895:1:37:17593:9954/1 +GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG +>895:1:37:17593:9954/2 +GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG +>895:1:37:17593:9954/1 +GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG +>895:1:37:17593:9954/2 +GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG |