| Previous changeset 11:579acb6fb8a8 (2013-04-29) Next changeset 13:462d362d0b8b (2013-04-29) |
|
Commit message:
Uploaded v0.0.20 preview 3, use the NCBI provided 64bit Linux binaries. |
|
modified:
tools/ncbi_blast_plus/ncbi_blast_plus.txt tools/ncbi_blast_plus/tool_dependencies.xml |
| b |
| diff -r 579acb6fb8a8 -r cd467dd9e2ff tools/ncbi_blast_plus/ncbi_blast_plus.txt --- a/tools/ncbi_blast_plus/ncbi_blast_plus.txt Mon Apr 29 09:27:48 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blast_plus.txt Mon Apr 29 10:18:29 2013 -0400 |
| b |
| @@ -102,6 +102,8 @@ fall-back in case the return code is not set properly). - Clearer naming of output files. v0.0.20 - Added unit tests for BLASTN and TBLASTX. + - Automatic installation via the Tool Shed now uses the NCBI provided + precompiled binaries for 64bit Linux, rather than compiling locally. Developers |
| b |
| diff -r 579acb6fb8a8 -r cd467dd9e2ff tools/ncbi_blast_plus/tool_dependencies.xml --- a/tools/ncbi_blast_plus/tool_dependencies.xml Mon Apr 29 09:27:48 2013 -0400 +++ b/tools/ncbi_blast_plus/tool_dependencies.xml Mon Apr 29 10:18:29 2013 -0400 |
| b |
| @@ -3,17 +3,26 @@ <package name="blast+" version="2.2.26+"> <install version="1.0"> <actions> - <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> - <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> + <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</action> + <action type="move_directory_files"> + <source_directory>ncbi-blast-2.2.26+/bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> -These links provide information for building the NCBI Blast+ package in most environments. +Downloads the precompiled 64bit Linux BLAST+ binaries from the NCBI, +which is faster than performing a local compliation, avoids any issues +with build dependencies, and is more reproducible between installations +as there is no variability from the compiler or library versions. -System requirements +If/when the Galaxy installation framework allows for 32bit versus 64bit, +or different operating system, the NCBI binaries cover the main cases. + +For more details, see: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download </readme> </package> |