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Commit message:
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/blastxml_to_top_descr commit 39737c01a51469d0cf9920273de6c151ba84048d-dirty |
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modified:
tools/blastxml_to_top_descr/README.rst tools/blastxml_to_top_descr/blastxml_to_top_descr.xml |
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| diff -r 6ade4e7c63b3 -r ccf0a59e8537 tools/blastxml_to_top_descr/README.rst --- a/tools/blastxml_to_top_descr/README.rst Thu Feb 09 11:22:39 2017 -0500 +++ b/tools/blastxml_to_top_descr/README.rst Thu May 18 07:40:03 2017 -0400 |
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| @@ -1,5 +1,5 @@ OBGalaxy tool to extract top BLAST hit descriptions from BLAST XML -================================================================ +================================================================== This tool is copyright 2012-2015 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. |
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| diff -r 6ade4e7c63b3 -r ccf0a59e8537 tools/blastxml_to_top_descr/blastxml_to_top_descr.xml --- a/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml Thu Feb 09 11:22:39 2017 -0500 +++ b/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml Thu May 18 07:40:03 2017 -0400 |
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| @@ -21,7 +21,7 @@ <inputs> <conditional name="input"> <param name="in_format" type="select" label="Input format"> - <option value="blastxml" select="True">BLAST XML</option> + <option value="blastxml" selected="true">BLAST XML</option> <option value="tabular">Tabular</option> </param> <when value="blastxml"> @@ -30,17 +30,17 @@ <when value="tabular"> <param name="in_file" type="data" format="tabular" label="BLAST results as tabular"/> <param name="qseqid" type="data_column" data_ref="in_file" - multiple="False" numerical="False" default_value="1" value="1" - label="Column containing query ID (qseqid)" - help="This is column 1 in standard BLAST tabular output" /> - <param name="sseqid" type="data_column" data_ref="in_file" - multiple="False" numerical="False" default_value="2" value="2" - label="Column containing match ID (sseqid)" - help="This is column 2 in standard BLAST tabular output"/> + multiple="false" numerical="false" default_value="1" value="1" + label="Column containing query ID (qseqid)" + help="This is column 1 in standard BLAST tabular output" /> + <param name="sseqid" type="data_column" data_ref="in_file" + multiple="false" numerical="false" default_value="2" value="2" + label="Column containing match ID (sseqid)" + help="This is column 2 in standard BLAST tabular output"/> <param name="salltitles" type="data_column" data_ref="in_file" - multiple="False" numerical="False" default_value="25" value="25" + multiple="false" numerical="false" default_value="25" value="25" label="Column containing containing descriptions (salltitles)" - help="This is column 25 in the default extended BLAST tabular output"/> + help="This is column 25 in the default extended BLAST tabular output"/> </when> </conditional> <param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/> |