| Previous changeset 24:3b4efe26da79 (2017-09-15) Next changeset 26:2faf54c2e151 (2017-09-15) |
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Commit message:
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 038641dc56c4f5880eedf536ba8313786c71dc0b-dirty |
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modified:
tools/ncbi_blast_plus/ncbi_macros.xml |
| b |
| diff -r 3b4efe26da79 -r cc9baedbc059 tools/ncbi_blast_plus/ncbi_macros.xml --- a/tools/ncbi_blast_plus/ncbi_macros.xml Fri Sep 15 10:02:56 2017 -0400 +++ b/tools/ncbi_blast_plus/ncbi_macros.xml Fri Sep 15 10:44:01 2017 -0400 |
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| @@ -188,7 +188,7 @@ <when value="file"> <param name="database" type="hidden" value="" /> <param name="histdb" type="hidden" value="" /> - <param argument="subject" type="data" format="fasta" label="Nucleotide FASTA subject file to use instead of a database"/> + <param argument="-subject" type="data" format="fasta" label="Nucleotide FASTA subject file to use instead of a database"/> </when> </conditional> </xml> @@ -200,7 +200,7 @@ <option value="file">FASTA file from your history (see warning note below)</option> </param> <when value="db"> - <param name="database" argument="db" type="select" multiple="true" label="Protein BLAST database"> + <param name="database" argument="-db" type="select" multiple="true" label="Protein BLAST database"> <options from_data_table="blastdb_p" /> </param> <param name="histdb" type="hidden" value="" /> @@ -208,13 +208,13 @@ </when> <when value="histdb"> <param name="database" type="hidden" value="" /> - <param name="histdb" argument="db" type="data" format="blastdbp" label="Protein BLAST database" /> + <param name="histdb" argument="-db" type="data" format="blastdbp" label="Protein BLAST database" /> <param name="subject" type="hidden" value="" /> </when> <when value="file"> <param name="database" type="hidden" value="" /> <param name="histdb" type="hidden" value="" /> - <param argument="subject" type="data" format="fasta" label="Protein FASTA subject file to use instead of a database"/> + <param argument="-subject" type="data" format="fasta" label="Protein FASTA subject file to use instead of a database"/> </when> </conditional> </xml> @@ -225,7 +225,7 @@ <option value="histdb">BLAST protein domain database from your history</option> </param> <when value="db"> - <param name="database" type="select" label="Protein domain database"> + <param name="database" argument="-db" type="select" label="Protein domain database"> <options from_data_table="blastdb_d" /> </param> <param name="histdb" type="hidden" value="" /> @@ -233,7 +233,7 @@ </when> <when value="histdb"> <param name="database" type="hidden" value="" /> - <param name="histdb" type="data" format="blastdbd" label="Protein domain database" /> + <param name="histdb" argument="-db" type="data" format="blastdbd" label="Protein domain database" /> <param name="subject" type="hidden" value="" /> </when> </conditional> @@ -245,12 +245,12 @@ <option value="prot">Protein</option> </param> <when value="nucl"> - <param name="database" type="select" multiple="true" label="Nucleotide BLAST database"> + <param name="database" argument="-db" type="select" multiple="true" label="Nucleotide BLAST database"> <options from_data_table="blastdb" /> </param> </when> <when value="prot"> - <param name="database" type="select" multiple="true" label="Protein BLAST database"> + <param name="database" argument="-db" type="select" multiple="true" label="Protein BLAST database"> <options from_data_table="blastdb_p" /> </param> </when> |