| Previous changeset 2:58359ce5bde9 (2013-04-29) Next changeset 4:482b7f4d3587 (2013-05-23) |
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Commit message:
Uploaded v0.0.7, minor changes to documentation and dependency management |
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modified:
tools/ncbi_blast_plus/blastxml_to_top_descr.txt tools/ncbi_blast_plus/blastxml_to_top_descr.xml tools/ncbi_blast_plus/repository_dependencies.xml |
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| diff -r 58359ce5bde9 -r bf634ebee84c tools/ncbi_blast_plus/blastxml_to_top_descr.txt --- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt Mon Apr 29 13:09:07 2013 -0400 +++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt Mon May 20 10:00:09 2013 -0400 |
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| @@ -9,6 +9,9 @@ identifiers with description for the top matches (by default the top 3), and output these as a simple tabular file along with the query identifiers. +It is available from the Galaxy Tool Shed at: +http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr + This requires the 'blast_datatypes' repository from the Galaxy Tool Shed to provide the 'blastxml' file format definition. @@ -53,6 +56,8 @@ v0.0.4 - Quote filenames in case they contain spaces (internal change) v0.0.5 - Include number of queries with BLAST matches in stdout (peek text) v0.0.6 - Check for errors via the script's return code (internal change) +v0.0.7 - Link to Tool Shed added to help text and this documentation. + - Tweak dependency on blast_datatypes too also work on Test Tool Shed Developers |
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| diff -r 58359ce5bde9 -r bf634ebee84c tools/ncbi_blast_plus/blastxml_to_top_descr.xml --- a/tools/ncbi_blast_plus/blastxml_to_top_descr.xml Mon Apr 29 13:09:07 2013 -0400 +++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.xml Mon May 20 10:00:09 2013 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.6"> +<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.7"> <description>Make a table from BLAST XML</description> <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command> <command interpreter="python"> @@ -49,5 +49,10 @@ to spot some problems (e.g. bacterial contaimination could be very obvious). +**Citation** + +This wrapper is available to install into other Galaxy Instances via the Galaxy +Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr + </help> </tool> |
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| diff -r 58359ce5bde9 -r bf634ebee84c tools/ncbi_blast_plus/repository_dependencies.xml --- a/tools/ncbi_blast_plus/repository_dependencies.xml Mon Apr 29 13:09:07 2013 -0400 +++ b/tools/ncbi_blast_plus/repository_dependencies.xml Mon May 20 10:00:09 2013 -0400 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> <repositories description="This requires the BLAST datatype definitions (e.g. the BLAST XML format)."> <!-- Revision 4:f9a7783ed7b6 on the main tool shed is v0.0.14 which added BLAST databases --> -<repository toolshed="http://toolshed.g2.bx.psu.edu" name="blast_datatypes" owner="devteam" changeset_revision="f9a7783ed7b6" /> +<repository name="blast_datatypes" owner="devteam" changeset_revision="f9a7783ed7b6" /> </repositories> |