| Previous changeset 11:e7733b353702 (2013-07-27) Next changeset 13:f542654faa3b (2013-07-27) |
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Commit message:
Uploaded |
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modified:
rgedgeR/rgedgeRpaired.xml |
| b |
| diff -r e7733b353702 -r aa528c834664 rgedgeR/rgedgeRpaired.xml --- a/rgedgeR/rgedgeRpaired.xml Sat Jul 27 01:43:13 2013 -0400 +++ b/rgedgeR/rgedgeRpaired.xml Sat Jul 27 01:56:58 2013 -0400 |
| b |
| @@ -375,7 +375,7 @@ -edgeIt = function (Count_Matrix,group,out_edgeR=F,out_VOOM=F,out_DESeq2=F,fdrtype='fdr',priordf=5, +edgeIt = function (Count_Matrix=c(),group=c(),out_edgeR=F,out_VOOM=F,out_DESeq2=F,fdrtype='fdr',priordf=5, fdrthresh=0.05,outputdir='.', myTitle='Differential Counts',libSize=c(),useNDF=F, filterquantile=0.2, subjects=c(),mydesign=NULL, doDESeq2=T,doVoom=T,doCamera=T,doedgeR=T,org='hg19', @@ -678,15 +678,15 @@ doedgeR = $edgeR.doedgeR edgeR_priordf = 0 -#if $DESeq2.doDESeq2 == "T" +#if $DESeq2.doDESeq2 == "T": out_DESeq2 = "$out_DESeq2" DESeq_fitType = "$DESeq2.DESeq_fitType" #end if -#if $edgeR.doedgeR == "T" +#if $edgeR.doedgeR == "T": out_edgeR = "$out_edgeR" edgeR_priordf = $edgeR.edgeR_priordf #end if -#if $doVoom == "T" +#if $doVoom == "T": out_VOOM = "$out_VOOM" #end if |