| Next changeset 1:8373595ba3be (2014-11-21) |
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Commit message:
Initial commit |
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added:
samtools_v1_1.xml |
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| diff -r 000000000000 -r 9390fca875f9 samtools_v1_1.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/samtools_v1_1.xml Fri Nov 21 16:25:17 2014 +0900 |
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| @@ -0,0 +1,36 @@ +<tool id="samtools_v1_1" name="samtools_v1_1" version="1.1"> + <requirements> + <requirement type="package" version="1.1">samtools</requirement> + </requirements> + <description>samtools version 1.1.</description> + <inputs> + <conditional name="command_type"> + <param name="command_type" type="select" label="Execute samtools command"> + <option value="view">view</option> + <option value="sort">sort</option> + <option value="mpileup">mpileup</option> + <option value="depth">depth</option> + <option value="faidx">faidx</option> + <option value="tview">tview</option> + <option value="index">index</option> + <option value="idxstats">idxstats</option> + <option value="fixmate">fixmate</option> + <option value="flagstat">flagstat</option> + <option value="calmd">calmd</option> + <option value="merge">merge</option> + <option value="rmdup">rmdup</option> + <option value="reheader">reheader</option> + <option value="cat">cat</option> + <option value="bedcov">bedcov</option> + <option value="targetcut">targetcut</option> + <option value="phase">phase</option> + <option value="bamshuf">bamshuf</option> + </param> + <when value="sort"> + <param format="sam" name="inputfile" type="data" label="sort alignment file"> + <option value="hg19">hg19</option> + </param> + </when> + </conditional> + </inputs> +</tool> |