| Previous changeset 4:752228a0f66d (2021-07-08) Next changeset 6:5ddad52360c5 (2021-07-09) |
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Commit message:
"planemo upload commit 699e21438d7d173e81e8d60b5717dc1485785c7d" |
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modified:
coast_report.xml macros.xml |
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added:
test-data/blast_results.tab test-data/protein.faa test-data/report/bh_results.tab test-data/report/coast_report.html test-data/report/coast_results.tab test-data/report/heatmap_plot.png test-data/report_h/bh_results.tab test-data/report_h/coast_report.html test-data/report_h/coast_results.tab test-data/report_h/heatmap_plot.png |
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| diff -r 752228a0f66d -r 90d6580e1c0f coast_report.xml --- a/coast_report.xml Thu Jul 08 11:27:10 2021 +0000 +++ b/coast_report.xml Thu Jul 08 18:14:50 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="coast_report" name="COAST - Report generator" version="0.1.1"> +<tool id="coast_report" name="COAST - Report generator" version="0.1.2"> <description>Recreate the report and outputs with different settings</description> <macros> <import>macros.xml</import> @@ -31,6 +31,25 @@ </outputs> <tests> <test> + <param name="query_file" value="protein.faa" /> + <param name="result_file" value="blast_results.tab" /> + <param name="aai" value="10" /> + <param name="min_cov" value="50" /> + <param name="min_id" value="40" /> + <output name="coast_report" file="report/coast_report.html" lines_diff="4"/> + <output name="bh_results" file="report/bh_results.tab" /> + <output name="coast_results" file="report/coast_results.tab" /> + </test> + <test> + <param name="query_file" value="protein.faa" /> + <param name="result_file" value="blast_results.tab" /> + <param name="aai" value="20" /> + <param name="min_cov" value="30" /> + <param name="min_id" value="30" /> + <param name="hypothetical" value="true" /> + <output name="coast_report" file="report_h/coast_report.html" lines_diff="4"/> + <output name="bh_results" file="report_h/bh_results.tab" /> + <output name="coast_results" file="report_h/coast_results.tab" /> </test> </tests> <help><![CDATA[ |
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| diff -r 752228a0f66d -r 90d6580e1c0f macros.xml --- a/macros.xml Thu Jul 08 11:27:10 2021 +0000 +++ b/macros.xml Thu Jul 08 18:14:50 2021 +0000 |
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| @@ -1,7 +1,7 @@ <macros> - <token name="@TOOL_VERSION@">0.1.1</token> + <token name="@TOOL_VERSION@">0.1.2</token> <xml name="requirements"> - <requirement type="package" version="0.1.1">coast</requirement> + <requirement type="package" version="0.1.2">coast</requirement> </xml> <xml name="citations"> <citations> |
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| diff -r 752228a0f66d -r 90d6580e1c0f test-data/blast_results.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast_results.tab Thu Jul 08 18:14:50 2021 +0000 |
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| b'@@ -0,0 +1,44648 @@\n+YP_004893808.1\t664\ttr|K4I3I7|K4I3I7_9CAUD\ttr|K4I3I7|K4I3I7_9CAUD\t664\t1\t664\t1\t664\t0.0\t1380\t3571\t664\t100.000\t664\t1204529\tSalmonella phage SSE121\tViruses\tUncharacterized protein OS=Salmonella phage SSE121 OX=1204529 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|G3BLL7|G3BLL7_9CAUD\ttr|G3BLL7|G3BLL7_9CAUD\t664\t1\t664\t1\t664\t0.0\t1380\t3571\t664\t100.000\t664\t889338\tSalmonella phage PVPSE1\tViruses\tRIIA protein OS=Salmonella phage PVPSE1 OX=889338 GN=1 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|V5KSH1|V5KSH1_9CAUD\ttr|V5KSH1|V5KSH1_9CAUD\t665\t1\t664\t1\t665\t0.0\t1221\t3159\t665\t87.368\t581\t1391428\tEscherichia phage 4MG\tViruses\tRIIA protein OS=Escherichia phage 4MG OX=1391428 GN=4MG_001 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|K4FAT9|K4FAT9_9CAUD\ttr|K4FAT9|K4FAT9_9CAUD\t664\t1\t664\t1\t664\t0.0\t1168\t3021\t665\t84.511\t562\t1141135\tCronobacter phage vB_CsaM_GAP31\tViruses\tRIIA protein OS=Cronobacter phage vB_CsaM_GAP31 OX=1141135 GN=GAP31_001 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|A0A6H0X3W3|A0A6H0X3W3_9CAUD\ttr|A0A6H0X3W3|A0A6H0X3W3_9CAUD\t662\t1\t662\t1\t661\t0.0\t994\t2569\t662\t69.486\t460\t2723896\tKlebsiella virus KpS8\tViruses\tRIIA lysis inhibitor OS=Klebsiella virus KpS8 OX=2723896 GN=kps8_001 PE=4 SV=1\t99\n+YP_004893808.1\t664\ttr|A0A1V0E7B5|A0A1V0E7B5_9CAUD\ttr|A0A1V0E7B5|A0A1V0E7B5_9CAUD\t662\t1\t662\t1\t661\t0.0\t985\t2546\t662\t68.429\t453\t1907784\tKlebsiella phage vB_KpnM_BIS47\tViruses\tRIIa protein OS=Klebsiella phage vB_KpnM_BIS47 OX=1907784 GN=BIS47_242 PE=4 SV=1\t99\n+YP_004893808.1\t664\ttr|A0A0S1S1E1|A0A0S1S1E1_9CAUD\ttr|A0A0S1S1E1|A0A0S1S1E1_9CAUD\t662\t1\t662\t1\t661\t0.0\t985\t2546\t662\t68.429\t453\t1719140\tKlebsiella phage vB_KpnM_KB57\tViruses\tRIIA protein OS=Klebsiella phage vB_KpnM_KB57 OX=1719140 GN=KB57_001 PE=4 SV=1\t99\n+YP_004893808.1\t664\ttr|A0A3G8F0J5|A0A3G8F0J5_9CAUD\ttr|A0A3G8F0J5|A0A3G8F0J5_9CAUD\t662\t1\t662\t1\t661\t0.0\t985\t2546\t662\t68.429\t453\t2483610\tProteus phage Mydo\tViruses\tRIIA protein OS=Proteus phage Mydo OX=2483610 GN=CPT_Mydo_012 PE=4 SV=1\t99\n+YP_004893808.1\t664\ttr|A0A7L8ZHS1|A0A7L8ZHS1_9CAUD\ttr|A0A7L8ZHS1|A0A7L8ZHS1_9CAUD\t630\t33\t662\t1\t629\t0.0\t943\t2437\t630\t68.889\t434\t2776831\tKlebsiella phage vB_KpnM_Seu621\tViruses\tRIIA protein OS=Klebsiella phage vB_KpnM_Seu621 OX=2776831 GN=phage621_00001 PE=4 SV=1\t95\n+YP_004893808.1\t664\ttr|A0A076G889|A0A076G889_9CAUD\ttr|A0A076G889|A0A076G889_9CAUD\t666\t1\t661\t1\t662\t0.0\t920\t2377\t663\t67.572\t448\t1527519\tEscherichia phage Av-05\tViruses\tRIIA protein OS=Escherichia phage Av-05 OX=1527519 GN=Av05_00149 PE=4 SV=1\t99\n+YP_004893808.1\t664\ttr|A0A2H4YGD3|A0A2H4YGD3_9CAUD\ttr|A0A2H4YGD3|A0A2H4YGD3_9CAUD\t537\t88\t610\t1\t522\t0.0\t749\t1934\t523\t66.539\t348\t2053702\tRaoultella phage Ro1\tViruses\tRIIa protein OS=Raoultella phage Ro1 OX=2053702 GN=Ro1_00001 PE=4 SV=1\t79\n+YP_004893808.1\t664\ttr|A0A0N7C966|A0A0N7C966_9CAUD\ttr|A0A0N7C966|A0A0N7C966_9CAUD\t280\t385\t664\t1\t280\t8.99e-170\t491\t1264\t280\t83.571\t234\t1654893\tSalmonella phage 40\tViruses\tUncharacterized protein OS=Salmonella phage 40 OX=1654893 GN=SP40_74 PE=4 SV=1\t42\n+YP_004893808.1\t664\ttr|A0A6B9X0U8|A0A6B9X0U8_9CAUD\ttr|A0A6B9X0U8|A0A6B9X0U8_9CAUD\t660\t1\t664\t1\t660\t9.04e-162\t485\t1248\t671\t40.537\t272\t2696428\tEscherichia phage naswa\tViruses\tRIIA protector from prophage-induced early lysis OS=Escherichia phage naswa OX=2696428 GN=naswa_95 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|A0A482MX40|A0A482MX40_9CAUD\ttr|A0A482MX40|A0A482MX40_9CAUD\t660\t1\t664\t1\t660\t9.04e-162\t485\t1248\t671\t40.537\t272\t2508197\tEscherichia phage vB_EcoM_HdK5\tViruses\tUncharacterized protein OS=Escherichia phage vB_EcoM_HdK5 OX=2508197 GN=HdK5_00067 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|A0A6C6Y0A4|A0A6C6Y0A4_9CAUD\ttr|A0A6C6Y0A4|A0A6C6Y0A4_9CAUD\t660\t1\t664\t1\t660\t9.04e-162\t485\t1248\t671\t40.537\t272\t2696415\tEscherichia phage magaca\tViruses\tRIIA protector from prophage-induced early lysis OS=Escherichia phage magaca OX=2696415 GN=magaca_153 PE=4 SV=1\t100\n+YP_004893808.1\t664\ttr|A0A6B9X7U9|A0A6B9X7U9_9CAUD\ttr|A0A6B9X7U9|A0A6B9X7U9_9CAUD\t660\t1\t664\t1\t660\t9.04e-162\t485\t1248\t671\t40.537\t272\t2696433\tEscherichia phage nimi\tViruses\tRIIA protector from prophage-induced early lysis O'..b'hage Paso OX=2767574 GN=CPT_Paso_044 PE=4 SV=1\t65\n+YP_004894050.1\t180\ttr|A0A7G5CG81|A0A7G5CG81_9CAUD\ttr|A0A7G5CG81|A0A7G5CG81_9CAUD\t125\t57\t158\t2\t112\t0.52\t35.8\t81\t111\t23.423\t26\t2754975\tProteus phage Vb_PmiP-P59\tViruses\tHydrolase_2 domain-containing protein OS=Proteus phage Vb_PmiP-P59 OX=2754975 PE=4 SV=1\t57\n+YP_004894050.1\t180\ttr|A0A7L7SN30|A0A7L7SN30_9CAUD\ttr|A0A7L7SN30|A0A7L7SN30_9CAUD\t125\t57\t158\t2\t112\t0.57\t35.4\t80\t111\t23.423\t26\t2772448\tProteus phage 3H10_20\tViruses\tLytic transglycosylase OS=Proteus phage 3H10_20 OX=2772448 PE=4 SV=1\t57\n+YP_004894050.1\t180\ttr|A0A7L8G4L8|A0A7L8G4L8_9CAUD\ttr|A0A7L8G4L8|A0A7L8G4L8_9CAUD\t1076\t28\t97\t216\t281\t0.63\t37.0\t84\t70\t27.143\t19\t2767573\tRhizobium phage Palo\tViruses\tUncharacterized protein OS=Rhizobium phage Palo OX=2767573 GN=CPT_Palo_047 PE=4 SV=1\t39\n+YP_004894050.1\t180\ttr|A0A646QVY5|A0A646QVY5_9CAUD\ttr|A0A646QVY5|A0A646QVY5_9CAUD\t1292\t54\t175\t44\t160\t0.65\t37.0\t84\t126\t21.429\t27\t2559282\tRoseobacter phage CRP-3\tViruses\tHydrolase_2 domain-containing protein OS=Roseobacter phage CRP-3 OX=2559282 GN=CRP3_gp36 PE=4 SV=1\t68\n+YP_004894050.1\t180\ttr|A0A6J5P9G8|A0A6J5P9G8_9CAUD\ttr|A0A6J5P9G8|A0A6J5P9G8_9CAUD\t182\t47\t172\t53\t182\t1.2\t35.4\t80\t138\t22.464\t31\t2100421\tuncultured Caudovirales phage\tViruses\tSleB Cell wall hydrolyses involved in spore germination OS=uncultured Caudovirales phage OX=2100421 GN=UFOVP1292_38 PE=4 SV=1\t70\n+YP_004894050.1\t180\ttr|A0A222YX57|A0A222YX57_9CAUD\ttr|A0A222YX57|A0A222YX57_9CAUD\t131\t53\t96\t15\t61\t1.4\t34.7\t78\t47\t36.170\t17\t2023996\tSynechococcus phage Bellamy\tViruses\tHydrolase_2 domain-containing protein OS=Synechococcus phage Bellamy OX=2023996 GN=236 PE=4 SV=1\t24\n+YP_004894050.1\t180\ttr|A0A191VYL4|A0A191VYL4_9CAUD\ttr|A0A191VYL4|A0A191VYL4_9CAUD\t638\t49\t155\t172\t277\t1.6\t35.4\t80\t108\t25.926\t28\t1815984\tRoseobacter phage RD-1410W1-01\tViruses\tHydrolase_2 domain-containing protein OS=Roseobacter phage RD-1410W1-01 OX=1815984 GN=RDp01_gp65 PE=4 SV=1\t59\n+YP_004894050.1\t180\ttr|A0A0E3FBB6|A0A0E3FBB6_9CAUD\ttr|A0A0E3FBB6|A0A0E3FBB6_9CAUD\t149\t69\t154\t55\t127\t1.8\t34.7\t78\t86\t24.419\t21\t1493514\tSynechococcus phage ACG-2014j\tViruses\t2OG-Fe(II) oxygenase family like protein OS=Synechococcus phage ACG-2014j OX=1493514 GN=Syn7803US103_176 PE=4 SV=1\t48\n+YP_004894050.1\t180\ttr|A0A1D8KMI7|A0A1D8KMI7_9CAUD\ttr|A0A1D8KMI7|A0A1D8KMI7_9CAUD\t149\t69\t154\t55\t127\t1.8\t34.7\t78\t86\t24.419\t21\t1883367\tSynechococcus phage S-CAM4\tViruses\tHydrolase_2 domain-containing protein OS=Synechococcus phage S-CAM4 OX=1883367 GN=C440309_180 PE=4 SV=1\t48\n+YP_004894050.1\t180\ttr|A0A2D1GNI1|A0A2D1GNI1_9CAUD\ttr|A0A2D1GNI1|A0A2D1GNI1_9CAUD\t159\t26\t175\t1\t159\t3.2\t33.9\t76\t162\t22.222\t36\t2041487\tPseudomonas phage VW-6S\tViruses\tCell wall hydrolase,putative endolysin OS=Pseudomonas phage VW-6S OX=2041487 GN=VW6S_25 PE=4 SV=1\t83\n+YP_004894050.1\t180\ttr|A0A646QVU6|A0A646QVU6_9CAUD\ttr|A0A646QVU6|A0A646QVU6_9CAUD\t647\t29\t172\t2\t139\t3.5\t34.7\t78\t146\t26.027\t38\t2559281\tRoseobacter phage CRP-2\tViruses\tHydrolase_2 domain-containing protein OS=Roseobacter phage CRP-2 OX=2559281 GN=CRP2_gp58 PE=4 SV=1\t80\n+YP_004894050.1\t180\ttr|A0A6J5T453|A0A6J5T453_9CAUD\ttr|A0A6J5T453|A0A6J5T453_9CAUD\t159\t7\t172\t1\t150\t3.7\t33.5\t75\t173\t24.277\t42\t2100421\tuncultured Caudovirales phage\tViruses\tCell wall hydrolase, SleB OS=uncultured Caudovirales phage OX=2100421 GN=UFOVP1655_26 PE=4 SV=1\t92\n+YP_004894050.1\t180\ttr|B2I4D0|B2I4D0_9CAUD\ttr|B2I4D0|B2I4D0_9CAUD\t56\t43\t73\t22\t52\t5.6\t31.2\t69\t31\t41.935\t13\t491003\tEscherichia virus EPS7\tViruses\tUncharacterized protein OS=Escherichia virus EPS7 OX=491003 GN=AGC_0092 PE=4 SV=1\t17\n+YP_004894050.1\t180\ttr|E3SKP8|E3SKP8_9CAUD\ttr|E3SKP8|E3SKP8_9CAUD\t128\t69\t96\t35\t62\t8.2\t32.3\t72\t28\t42.857\t12\t445685\tSynechococcus phage S-SSM5\tViruses\tPeptidase domain-containing protein OS=Synechococcus phage S-SSM5 OX=445685 GN=SSSM5_209 PE=4 SV=1\t16\n+YP_004894051.1\t54\ttr|G3BMB0|G3BMB0_9CAUD\ttr|G3BMB0|G3BMB0_9CAUD\t54\t1\t54\t1\t54\t3.94e-34\t114\t286\t54\t100.000\t54\t889338\tSalmonella phage PVPSE1\tViruses\tUncharacterized protein 244 OS=Salmonella phage PVPSE1 OX=889338 GN=244 PE=4 SV=1\t100\n' |
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| diff -r 752228a0f66d -r 90d6580e1c0f test-data/protein.faa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/protein.faa Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,1105 @@\n+>YP_004893808.1 rIIA protein\n+MIIQRAEEKVQVSGSVQRYQAGIAINAETFSILIDGIYNDKVLAAVREPLFNAVDSHTEA\n+GCRDKPIIIHSPTDLEPWYSVRDGGLGMDFDMVTQTFMMLGTSTKRDSNELIGAKGIGSK\n+APFTVTDMFTVTSVKNGMKTVYSVHKNEGIPEVVPLHESKTTEENGVEIKFNVDPSETSK\n+YRQAIVKCLRYAKFPYEINDPFVTSEINDRTYPVQYRYEDKETGWMLEMYGSVSRNADSV\n+VVMGQQPYLSNYLSSNKNWPMMMVSIPIGDCDVNPGREWTIEGKNDRGFRDRLEKFVTEA\n+IEKRGQEVVEELKQLPTLKEVLEYMKRVGGYFSTRYGSGFIADKFHDHFGTFSIDKCITY\n+GEKGTRRETDKTYGYADLMNGSPLVYNDDGKCIRTKCNWLSENCFKRVYVTERIEALEIL\n+KDPFFVGMVHKLSDLEKRPVVKGEKKYGGYGLYEPGHKVWVIDQDGSIKSDRISRADFDD\n+IEAAMIYSGGQVKGNCDLGAVQYLHRKQQPETFLKDLGVEGKMYIVPLNRSGWLPDETRI\n+VTKDDLYELAKQNLMEYHLNQRTNCSSTYRQLVKELGIFGVKVETDPEYKPKVNMSYSLS\n+NIKGYYALEKKAERIVNARMRIGKKLLEVKKSRYPLLKYVDLKHFNTPEMIEYRQLIDSK\n+GETK\n+>YP_004893809.1 rIIB protein\n+MSQLFVSRSAARKFAADNGMKVVDRGLSPAVLATGRWMVVPKDSQGASKPPEVDMSFTSE\n+AKPAQASQFFASRGDARDFAKGKKNAKIIDHAKTSDGRDKHEGVVKDLGKQGKRWEVVFD\n+VTDLHIEATVTLLPEPHKVPVTVVVEESEPKTYFDEETVEKKDPVVIMTPGNVCISMPDG\n+TQHTINRDNDIFPDVGLLLIEGDIEGAIALIEAGKEAKAEKVVDLGPDLKLLDGVLYWHG\n+QKQESTLADRILNDIKNDTFDDRYVKFMQKLMHNPSYASVKMLYDFIQHNDLEILENGDV\n+KAYKKITITTDGPRDSYTRKVPNYKGQIISMPRNMVEDNPNQTCSQGLHIASLEYAGGFG\n+GNGLIEVAVNPADVVSVPYDYNQQKCRCCRYEVLTGAEKPVGAPDVLVIGTMGEILEEIY\n+LEEETKED\n+>YP_004893810.1 putative helicase\n+MSDFGVGVEAALGAVMSGDNVFVTGPGGSGKSYTIKTIQSLYAGSVLTVAPTGAAAINVN\n+GMTAHRAFGLTMGVATKKDTEEIKPKVKRLLKSKALKIIIIDEISMFRADKLWEMDMKCR\n+LARKQPNKPFGGLQICMFGDFFQNPPVLTETEKETYFQFHYTELACFSDTWKELNPYPIL\n+LEKVYRQSSVHFSTMLNCLRRGQRIPEIVKFMNTHCYDHGKPLDAITITSTNAAADKVNK\n+KRFDEVPGLPTLYTAKKSGEFTQKPVPEELYLKEGAQVMITVNDPKGFDEPEYVNGSRGE\n+IIELGKDSVKVRLDCGKVVDVDAYVWENVEYNPIKVRNSDGTTTEEIEKITIGEYRALPI\n+RLGWAVTIHKAQGLTLPELNIDFGYGAFAPGMAYVAFSRATSAKGLRLLKKVKEKDIIVD\n+QRIVRFYEETFPGK\n+>YP_004893811.1 hypothetical protein\n+MASYSRNELVKKFQKELEDWNNAPAASALKPPKDTTHIQMASLDEMMSAYGYVPRRVPQY\n+PNITDGRFGYQSLSGNDFISLEDAVSYHNNAMFRGNPFRKIPDRLSFALQNRIVEQVSVQ\n+RDKSRYAGGSGIKSQKLWVKFYDI\n+>YP_004893812.1 hypothetical protein\n+MTFEVEDFSDLKKVSTEKLLKLRDVANDNYNEAHRHMTKALLHLWSIKDELELRKNAEKT\n+I\n+>YP_004893813.1 hypothetical protein\n+MLKKLFNWLFAKKEEPHREVNVFDFTKREAGHDITLRMIDDGEYAEAMVFLAIDQQAPGV\n+GDFIVVNLEQSSMQGEVDYHMTFVVESVTCIALGISQLTLTRYEGAEDE\n+>YP_004893814.1 hypothetical protein\n+MSKSRKVEIEFEYKHPTEGVVAVEALYTVQKPDFYSKESDWDYNGFQDLEHYAVFKNGTQ\n+ILVDIPDDVMYHHLREHLRNAEIEGCFHREEEF\n+>YP_004893815.1 hypothetical protein\n+MAKSEVKLVEFNMKQTKKEEAEEILAGLIDEGFVLMGQHEAEGWMNFTMVKSDNSLNVVL\n+NTDGGLTPAHQFQVVNGAAERVVH\n+>YP_004893816.1 hypothetical protein\n+MVQQSELFIEVRMNKVVWSLFDGSGIMGWEYAKNGYKVYCFNFDAGDHGGYELVRVKHPN\n+IQYVNSWIDEGFDPEKDGIPKPDIIFAFPPCTDMAVSGAAHFASKAAKDPLFQVKAVNTA\n+KVAAMLGDKYGCPYMIENPVSVLSSKWRRPNHMFHPYEYGGYLPHDDVHPFFPEYINPRD\n+SYPKKTCLWTGNGFKMPPAKPVAVAKGYSEQHKKLGGKSAKTKLIRSLTPRGFAAAVFYS\n+NQ\n+>YP_004893817.1 hypothetical protein\n+MLLQADKVSGIYPIDQANPSRAFTSYGTPAGQSTVQAKFGQYSFDCRNGGFQMSGTVKPD\n+LAFAKGDPFTIEFWSYNTAVDSATWWMYFNTGTSSCLKTYQSTIYLQDNSASVQVGPLSR\n+IPTNQWNHIAIVYDGTNLQFYVNGNRIVSQASAGGWSTASSFARVMGGEGSAKCFMDQFR\n+ISGVARYSGTSFTVPTAPFDMD\n+>YP_004893818.1 hypothetical protein\n+MKNVVIAKASTLQKLEDNLNFFFEKGYHIQGGISFQDGLYIAVVVRPF\n+>YP_004893819.1 HNH endonuclease\n+MGNGPDWGSIVEYRDGKLYWKVNTFSGRNHNHPAAVIGKEAGSISGKGYCTIRFQGYRCY\n+RHVIVWLLHHGPIPKGLQVDHIKSLRETGGVADDRITNLQLLTRGTNTRKGGGNMPNSSN\n+KSSARRGVSWDRGYPSKPWRARITVDGKVLLKNFESFNEASQQRELWEKEYCYGGL\n+>YP_004893820.1 primase/helicase\n+MSNFDFSAYRQGGQENPKAQRFGNNGNRGGRVSYQQREEETLESVVNGTRILAVPEMSLS\n+LDAAKYFKIRSAVSASDGVTITATYLPYYDKYGKLTGYKKRDWTLPKEKKGHFSVVGTVK\n+AASQFFGQHEAAMGAGRKQIFVVEGEGDVTAGWQAGFDFVKALAASPNAPKGVKDWAASV\n+LKGITAIQNGEEVAGIPTLPFVGLNCGTANAVDTFANNEKFIRGYEKVVLGFDNDEATAL\n+EKERKIKKGKEATDDVAAFLLSDNIFVARYPNERNDPAGVKDIRDMYDAGKGREIWNMFS\n+KAEDRYVPDKLISLSNITIENLRKKKKDGVPLPGMPRLYELTKGPRTGELWTLTGPSGGG\n+TLLNIRKSTISRKIEYAIVDYLRNMDIPRLDGWTEHEKVAIIRLEEDEEESVNSLYAEEL\n+KVDPKAFVADPEQFLTEEEHLAIHQRWIAEDKIKIFDHFGSIPTDQLIQKLKQMVFLDGC\n+KWIILDHLSMVISGLKSDNERRDLDNIMTELAAFCKQYDVFILSISHMKRKELQLPKDKD\n+GNMLPFWYPVRKEDLRGSAALEQLSWIVLGVEPEELPDRSRGRVRVVVMKNRPHKKLGVA\n+DTMIMDENGQFTDASGWVWEDGMFKLDGEVMLRPEGMVQTLQLETPVGKVNVPAPVVENP\n+VQLPSPADMDEDTPF\n+>YP_004893821.1 HNH endo'..b'HYLKTDDFQLMA\n+IAVLHDVLEDTDVTAADLVILGFSNRVEDAVVLLTKTPNQTPEEYFQGIASNYDAVRVKL\n+ADLRHNSDVRRLKGLTDKDLLRVRKYHGMYLRLTKMKEHHEAINLLSQL\n+>YP_004894028.1 hypothetical protein\n+MNLLTLLRTNKYTQKQMGFLLGMPSWRVSKLVLKLEKRGYIQVSRRYKLSGPVSRPFCVY\n+DQNLYKVTLYRSKECPEIKATPTKAQSKNPASAGRGLRNFAKHLVTGCLTSIQRQEKP\n+>YP_004894029.1 hypothetical protein\n+MVKLTGKWWVVMTTLTLNPLRSFDMNKSLQEAIELRRSKGQSDAEIVDYLLKRSDRKEEH\n+LTYYKNRASELKSALIQAQFESGRRVKVTVDNIIRTCWGNYLYHKNTRYVYDGKLKAWVK\n+DPSKNSLLQHNIKHLPGKFHVEVILPDEEMPRKWEGVAVGNLFGKRLLAVEKDGMWINSD\n+DTFIITKKEKNNA\n+>YP_004894030.1 hypothetical protein\n+MRNWRTRFDLRDVWGQRNGECGPEEWTDKTVHELAKEIARRIKRKFPQHMIDGHDWDPRL\n+TEVQDMFESVPTLKEHRDMLARLIANENVCDDEICEISKDTPMAQFNEAMDLFYDWCDSS\n+SVWVDK\n+>YP_004894031.1 hypothetical protein\n+MRALDFSDAAVMPLPRHRLTRRAWYAVFGAQKLEPDEKMFSEDLATRIHTLYNDIAPEEI\n+EGVIANYLEERRQTNVES\n+>YP_004894032.1 MoxR ATPase\n+MSSRNIFDDNRITLRDIPDLMRFCQRRGRSLMMFGGAGLGKSQAMKQVANMLFGERDDNL\n+IDFRLADKEPSDVVGVQIPVTDDKGVTRTVYAIPNFWPEDPNWKGIVFLDELLHAEPYLQ\n+KVAYQIMLDHRIGTYMFPKGAVFAGAGNRPGDGTAVSMLEAPLANRMILVELDYDTTVWL\n+QDYALHNDVHHNVVAFIGANPGKLENYEEMLEINSPSYATPRTWVTASDILYDYDAGILS\n+TRLARAALQGSIGKALTDELWYYHTRIANMVPIEGVMDGSIKKHTGSDTSDVLWTLGSQG\n+SIWLRKAIQNKEYTDDQVIDFAANFLQYMYDNFGQHDTSSNRDFVSSVFMSFIQENSFGK\n+AILLSGDRERLPAKLLGKYPVVMQIITEYRKNFAEGVDAIVN\n+>YP_004894033.1 hypothetical protein\n+MTKLNWKEAQQAMREGKKVRNQYFTPEEFFEMKNGQIVCEMGYNMAGWYLGEAWQDEGWS\n+VIDA\n+>YP_004894034.1 hypothetical protein\n+MRRPSFGYIYILDKDGDERFVRLGSLDIEYVKDQYGPDAKNCHIREDNGFCQSSWMAGES\n+AGAILAKIAEHDKEYVHFVRDFAQRNRIVLMKGELW\n+>YP_004894035.1 hypothetical protein\n+MVKEKLRPIPNYADVMDVHSWDCCVKCGAFIPDDGNGYWCPDENYESDISCWSPRPEWAT\n+HVAWYNR\n+>YP_004894036.1 hypothetical protein\n+MGDPRSVVQSLMAKFKFPLKEINEVWWIDRFDMVMAGYTYQRQRIFVVCAKTKAEARESM\n+DAFKERSCA\n+>YP_004894037.1 hypothetical protein\n+MKVKMNCNYSDRLDHPRAGDVLDVLEEVYNGTFIEYYRCEWKGGDLDVYPYECDEVKK\n+>YP_004894038.1 HNH endonuclease\n+MKESEEALQALKSSFSYDPETGLFTCINPLARRHFGKVAGTKRKDGYVRLGVKIEGKGFY\n+FLAHRVAWAFYYGVWPTYFIDHKDRQKDNNRITNLRDVQKFVNVYNYSRGKKNQTGFRGV\n+FVDKRWTRLRYHAVYSKTHLGTFDSAEEASECYQAYVKTIHDIVVED\n+>YP_004894039.1 putative phosphatase\n+MLKYKVGDLIEAVKSGEVNVFAHGCNCYCTMGSGIAPLIKEAFPKMYAADLKTEKGDKTK\n+LGTCTVAFLNDGSLAGFNLYSQYGYNRRKQGLRDLDYNALYDSMVEMKKLLQSYTDGPMD\n+IYRIGFPKLGAGLAGGDWNVIEAMIKSIFHDCDVTVYILPEKK\n+>YP_004894040.1 hypothetical membrane protein\n+MMVEIIYLLIAFIGFYIFIKRTQRDFGRVDSVDLFAAICMGLLWPVYFTNLVVLRIINGD\n+WK\n+>YP_004894041.1 hypothetical protein\n+MLKVWMYMQQMELYLHTVLLVAKKYALILMTDEDPRDDVDNLVKANEWIESLGWKHEGDD\n+>YP_004894042.1 hypothetical protein\n+MEEIYVIIDTHNATFWKSANDKTSWPSAGTAKSAFGSSRYNPLRCLYSQQDRFKIAKVTT\n+AGVIYE\n+>YP_004894043.1 hypothetical protein\n+MSKDSVYVIYDKEDDCLWHHKAKIGWISSGAAKNAWNLGKKIKFDNQNRYVVVCVNELLV\n+KSLIEEKRNDNE\n+>YP_004894044.1 hypothetical protein\n+MTMSKSVAGIGQTEQEAVYIGGKRFAGALTNARPFYGFGDTKDVRCIKGFCYRDLKNRGF\n+DNGDIRTSVVKELIIHERDIYAITMNSAYRLDNVCLLAFLASGVA\n+>YP_004894045.1 hypothetical protein\n+MSVEANLTYRVTPEYFQEATKRLSPGEWVVTQADSVKRTLKVGNEVYVEEK\n+>YP_004894046.1 RnlB RNA ligase 2\n+MTKAIKYPSTNQFRQVIRSVHDRLTFDGIDENGCVKRKVVNPTEFLLPYVGTVKIHGTNG\n+SIVFYSEDEVVFQSKERVLSLEQDNSGFMAFMVRKDTGALLDQVKHICEINEVPFEFPVE\n+IAGEWAGRGIQKGVAVSEVEQFFAIFRVAIGQKETSLKWLPPSAIFGMGLPEQRIFNVLD\n+FGYWYVHIPFNEPEMVQNDLTTLTLQVEAQCPAGKFFGVEGVGEGIVWSPKSIELAQDSG\n+LWFKVKGEKHSVSKVKTLAEVDPVRLQNIREFVEYAVTENRLEQGLGEVGLDQTKIGEFI\n+GWVSRDINKEEGDVLEANALTMKDVAKFISNKSRGWYMQKLNEGL\n+>YP_004894047.1 hypothetical protein\n+MALIVSTTRAVKDKPLKAQCETLIFEDEEQGRQYVEEHATFVFSVQKARIVKNGKTETQV\n+>YP_004894048.1 hypothetical protein\n+MEKPKPKFEVGQKVKDLLSGRILSITSRCYFSGWVYSFDSVGMYLYPEEDLEAVNGTA\n+>YP_004894049.1 hypothetical protein\n+MGLREWLNVKRRQMEDNVVNSISINGNTIINGNVVGGDMNITSRGDNIYINGELVHTTQE\n+KNITVVIHGDTKGISTVAGDVNVYGVNAGNIKTTSGDVHVEHGALGDVTTVSGDVYAEKI\n+EGNVKTVSGDISRR\n+>YP_004894050.1 cell wall hydrolase SleB\n+MEQDLKIKAIILATACAFSLTTTPVLAKENAKKPKVIHLCKKDDTAVNILACNMYREARG\n+ESDHGLMSIAFVTLNRKDNDKFPRTVKKIVYQPGQFSWTSYSTSFKVYEKDRWEKAKEFA\n+EVLTKIHNNNKIVYDAIDITKGSTYYHSKKVKPYWTKAMIRTVSIDNHIYYKEKPDPQGA\n+>YP_004894051.1 hypothetical protein\n+MKNFFAALCLHYPVSCDTVYYSMDVLGTSVRSVSSWITGRHLHSAESSQKKPHK\n' |
| b |
| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report/bh_results.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report/bh_results.tab Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,37112 @@\n+rel_pos\tqseqid\tqlength\tstaxids\tqlen\tsseqid\tsallseqid\tslen\tqstart\tqend\tsstart\tsend\tevalue\tbitscore\tscore\tlength\tpident\tnident\tsscinames\tsskingdoms\tstitle\tqcovs\n+1\tYP_004893808.1\t664\t2675448\t664.0\ttr|A0A345MKZ6|A0A345MKZ6_9CAUD\ttr|A0A345MKZ6|A0A345MKZ6_9CAUD\t840.0\t26.0\t355.0\t28.0\t365.0\t7.65e-19\t97.8\t242.0\t347.0\t24.207\t84.0\tPodoviridae sp. ctda_1\tViruses\tRIIA protein OS=Podoviridae sp. ctda_1 OX=2675448 PE=4 SV=1\t50.0\n+1\tYP_004893808.1\t664\t2065203\t664.0\ttr|A0A2I6PFZ2|A0A2I6PFZ2_9CAUD\ttr|A0A2I6PFZ2|A0A2I6PFZ2_9CAUD\t681.0\t23.0\t345.0\t22.0\t337.0\t5.98e-19\t97.8\t242.0\t332.0\t25.602\t85.0\tProteus phage phiP4-3\tViruses\tRIIA protein OS=Proteus phage phiP4-3 OX=2065203 GN=phiP43_268 PE=4 SV=1\t49.0\n+1\tYP_004893808.1\t664\t2025809\t664.0\ttr|A0A249XX12|A0A249XX12_9CAUD\ttr|A0A249XX12|A0A249XX12_9CAUD\t681.0\t23.0\t325.0\t22.0\t316.0\t1.61e-19\t99.8\t247.0\t312.0\t25.641\t80.0\tProteus phage PM2\tViruses\tUncharacterized protein OS=Proteus phage PM2 OX=2025809 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2742944\t664.0\ttr|A0A653FXI0|A0A653FXI0_9CAUD\ttr|A0A653FXI0|A0A653FXI0_9CAUD\t629.0\t1.0\t323.0\t1.0\t325.0\t7.75e-19\t97.4\t241.0\t342.0\t25.731\t88.0\tEscherichia phage T4_ev151\tViruses\tPhage rIIA lysis inhibitor (Fragment) OS=Escherichia phage T4_ev151 OX=2742944 PE=4 SV=1\t49.0\n+1\tYP_004893808.1\t664\t645664\t664.0\ttr|E3SF90|E3SF90_9CAUD\ttr|E3SF90|E3SF90_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t5.040000000000001e-21\t104.0\t259.0\t322.0\t25.776\t83.0\tShigella phage SP18\tViruses\tRIIA protector from prophage-induced early lysis OS=Shigella phage SP18 OX=645664 GN=rIIA PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2744001\t664.0\ttr|A0A7D7IBC1|A0A7D7IBC1_9CAUD\ttr|A0A7D7IBC1|A0A7D7IBC1_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t4.27e-21\t104.0\t260.0\t322.0\t25.776\t83.0\tEscherichia phage CJ20\tViruses\tRIIA protector from prophage-induced early lysis OS=Escherichia phage CJ20 OX=2744001 GN=CJ20_047 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t754058\t664.0\ttr|M4QQI8|M4QQI8_9CAUD\ttr|M4QQI8|M4QQI8_9CAUD\t716.0\t7.0\t278.0\t8.0\t294.0\t1.43e-19\t99.8\t247.0\t287.0\t25.784\t74.0\tVibrio phage PWH3a-P1\tViruses\tRIIA OS=Vibrio phage PWH3a-P1 OX=754058 GN=VPIG_00087 PE=4 SV=1\t41.0\n+1\tYP_004893808.1\t664\t1567029\t664.0\ttr|A0A0A7HDB1|A0A0A7HDB1_9CAUD\ttr|A0A0A7HDB1|A0A0A7HDB1_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t2.6200000000000003e-21\t105.0\t262.0\t331.0\t25.982\t86.0\tEscherichia phage vB_EcoM_VR26\tViruses\tProtector from prophage-induced early lysis OS=Escherichia phage vB_EcoM_VR26 OX=1567029 GN=rIIA PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t1636250\t664.0\ttr|A0A0G2SS18|A0A0G2SS18_9CAUD\ttr|A0A0G2SS18|A0A0G2SS18_9CAUD\t681.0\t23.0\t325.0\t22.0\t316.0\t1.12e-19\t100.0\t248.0\t311.0\t26.045\t81.0\tProteus phage vB_PmiM_Pm5461\tViruses\tRIIA protein OS=Proteus phage vB_PmiM_Pm5461 OX=1636250 GN=Pm5461_001 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2746075\t664.0\ttr|A0A7G5BC88|A0A7G5BC88_9CAUD\ttr|A0A7G5BC88|A0A7G5BC88_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t3.0900000000000003e-21\t105.0\t261.0\t329.0\t26.14\t86.0\tEscherichia phage DK-13\tViruses\tProtector from prophage-induced early lysis OS=Escherichia phage DK-13 OX=2746075 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t1567027\t664.0\ttr|A0A0A7HFR0|A0A0A7HFR0_9CAUD\ttr|A0A0A7HFR0|A0A0A7HFR0_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t3.46e-21\t105.0\t261.0\t329.0\t26.14\t86.0\tEscherichia phage vB_EcoM_VR20\tViruses\tProtector from prophage-induced early lysis OS=Escherichia phage vB_EcoM_VR20 OX=1567027 GN=rIIA PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2587809\t664.0\ttr|A0A4Y5TQM8|A0A4Y5TQM8_9CAUD\ttr|A0A4Y5TQM8|A0A4Y5TQM8_9CAUD\t715.0\t23.0\t310.0\t22.0\t306.0\t1.94e-21\t105.0\t263.0\t297.0\t26.263\t78.0\tKlebsiella phage Marfa\tViruses\tProtector from prophage induced early lysis OS=Klebsiella phage Marfa OX=2587809 GN=CPT_Marfa_001 PE=4 SV=1\t43.0\n+1\tYP_004893808.1\t664\t2283305\t664.0\ttr|A0A345ME70|A0A345ME70_9CAUD\ttr|A0A345ME70|A0A345ME70_9CAUD\t641.0\t27.0\t486.0\t29.0\t475.0\t2.86e-19\t98.6\t244.0\t479.0\t26.305\t126.0\tStreptomyces phage SparkleGoddess\tViruses\tRIIA-like protein OS=Streptomyces phage SparkleGoddess OX=2283305 GN=165 PE=4 SV=1\t69.0\n+1\tYP_004893808.1\t664\t2301714\t664.0\ttr|A0A385DXH7|A0A38'..b'1643\t180.0\ttr|A0A5J6DAH8|A0A5J6DAH8_9CAUD\ttr|A0A5J6DAH8|A0A5J6DAH8_9CAUD\t174.0\t10.0\t179.0\t4.0\t173.0\t2.75e-94\t276.0\t706.0\t170.0\t71.765\t122.0\tErwinia phage pEp_SNUABM_01\tViruses\tPutative cell wall hydrolase OS=Erwinia phage pEp_SNUABM_01 OX=2601643 GN=pEpSNUABM01_024 PE=4 SV=1\t94.0\n+243\tYP_004894050.1\t180\t1907784\t180.0\ttr|A0A1V0E780|A0A1V0E780_9CAUD\ttr|A0A1V0E780|A0A1V0E780_9CAUD\t127.0\t54.0\t180.0\t1.0\t127.0\t1.9600000000000001e-75\t227.0\t578.0\t127.0\t81.89\t104.0\tKlebsiella phage vB_KpnM_BIS47\tViruses\tCell wall hydrolase OS=Klebsiella phage vB_KpnM_BIS47 OX=1907784 GN=BIS47_241 PE=4 SV=1\t71.0\n+243\tYP_004894050.1\t180\t2053702\t180.0\ttr|A0A2H4YGE3|A0A2H4YGE3_9CAUD\ttr|A0A2H4YGE3|A0A2H4YGE3_9CAUD\t175.0\t5.0\t180.0\t1.0\t175.0\t3.88e-106\t306.0\t784.0\t176.0\t82.386\t145.0\tRaoultella phage Ro1\tViruses\tPutative cell wall hydrolyse OS=Raoultella phage Ro1 OX=2053702 GN=Ro1_00003 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t2483610\t180.0\ttr|A0A3G8F107|A0A3G8F107_9CAUD\ttr|A0A3G8F107|A0A3G8F107_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t1.82e-109\t315.0\t806.0\t176.0\t82.955\t146.0\tProteus phage Mydo\tViruses\tEndolysin OS=Proteus phage Mydo OX=2483610 GN=CPT_Mydo_014 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t1719140\t180.0\ttr|A0A0S1S1U5|A0A0S1S1U5_9CAUD\ttr|A0A0S1S1U5|A0A0S1S1U5_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.98e-110\t317.0\t811.0\t176.0\t84.091\t148.0\tKlebsiella phage vB_KpnM_KB57\tViruses\tPutative cell wall hydrolyse OS=Klebsiella phage vB_KpnM_KB57 OX=1719140 GN=KB57_245 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t2723896\t180.0\ttr|A0A6H0X4L9|A0A6H0X4L9_9CAUD\ttr|A0A6H0X4L9|A0A6H0X4L9_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.98e-110\t317.0\t811.0\t176.0\t84.091\t148.0\tKlebsiella virus KpS8\tViruses\tCell wall hydrolase OS=Klebsiella virus KpS8 OX=2723896 GN=kps8_261 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t2776831\t180.0\ttr|A0A7L8ZIE2|A0A7L8ZIE2_9CAUD\ttr|A0A7L8ZIE2|A0A7L8ZIE2_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.98e-110\t317.0\t811.0\t176.0\t84.091\t148.0\tKlebsiella phage vB_KpnM_Seu621\tViruses\tPutative cell wall hydrolyse OS=Klebsiella phage vB_KpnM_Seu621 OX=2776831 GN=phage621_00266 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t1391428\t180.0\ttr|V5KSH0|V5KSH0_9CAUD\ttr|V5KSH0|V5KSH0_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t6.0599999999999996e-111\t318.0\t816.0\t176.0\t84.659\t149.0\tEscherichia phage 4MG\tViruses\tCell wall hydrolase SleB OS=Escherichia phage 4MG OX=1391428 GN=4MG_270 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t1141135\t180.0\ttr|K4F513|K4F513_9CAUD\ttr|K4F513|K4F513_9CAUD\t180.0\t1.0\t180.0\t1.0\t180.0\t4.53e-114\t327.0\t837.0\t180.0\t85.0\t153.0\tCronobacter phage vB_CsaM_GAP31\tViruses\tCell wall hydrolase SleB OS=Cronobacter phage vB_CsaM_GAP31 OX=1141135 GN=GAP31_003 PE=4 SV=1\t100.0\n+243\tYP_004894050.1\t180\t1654894\t180.0\ttr|A0A0N7CDI5|A0A0N7CDI5_9CAUD\ttr|A0A0N7CDI5|A0A0N7CDI5_9CAUD\t46.0\t49.0\t77.0\t16.0\t44.0\t3.17e-12\t63.9\t154.0\t29.0\t93.103\t27.0\tSalmonella phage 41\tViruses\tPutative terminase small subunit OS=Salmonella phage 41 OX=1654894 GN=SP41_116 PE=4 SV=1\t16.0\n+243\tYP_004894050.1\t180\t1654893\t180.0\ttr|A0A0N6WG74|A0A0N6WG74_9CAUD\ttr|A0A0N6WG74|A0A0N6WG74_9CAUD\t145.0\t36.0\t179.0\t1.0\t144.0\t5.44e-102\t295.0\t754.0\t144.0\t95.139\t137.0\tSalmonella phage 40\tViruses\tHydrolase_2 domain-containing protein OS=Salmonella phage 40 OX=1654893 GN=SP40_78 PE=4 SV=1\t80.0\n+243\tYP_004894050.1\t180\t1204529\t180.0\ttr|K4I256|K4I256_9CAUD\ttr|K4I256|K4I256_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.92e-129\t365.0\t936.0\t176.0\t99.432\t175.0\tSalmonella phage SSE121\tViruses\tHydrolase_2 domain-containing protein OS=Salmonella phage SSE121 OX=1204529 PE=4 SV=1\t98.0\n+243\tYP_004894050.1\t180\t889338\t180.0\ttr|G3BMA9|G3BMA9_9CAUD\ttr|G3BMA9|G3BMA9_9CAUD\t180.0\t1.0\t180.0\t1.0\t180.0\t3.98e-133\t375.0\t962.0\t180.0\t100.0\t180.0\tSalmonella phage PVPSE1\tViruses\tCell wall hydrolase SleB OS=Salmonella phage PVPSE1 OX=889338 GN=243 PE=4 SV=1\t100.0\n+244\tYP_004894051.1\t54\t889338\t54.0\ttr|G3BMB0|G3BMB0_9CAUD\ttr|G3BMB0|G3BMB0_9CAUD\t54.0\t1.0\t54.0\t1.0\t54.0\t3.94e-34\t114.0\t286.0\t54.0\t100.0\t54.0\tSalmonella phage PVPSE1\tViruses\tUncharacterized protein 244 OS=Salmonella phage PVPSE1 OX=889338 GN=244 PE=4 SV=1\t100.0\n' |
| b |
| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report/coast_report.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report/coast_report.html Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,1027 @@\n+<!DOCTYPE html>\n+<html>\n+ <head>\n+ <title>COAST Report</title>\n+ </head>\n+ <body>\n+ <div id="header">\n+ <h1>COAST Report</h1>\n+ </div>\n+ <div class="body">\n+ <div>\n+ <h2>Query Summary</h2>\n+ <p>Organism: Unknown</p>\n+ <p>Number of proteins: 244</p>\n+ <h3>AAIc settings:</h3>\n+ <p>AAIc filter: 10%</p>\n+ <h3>AAIbd settings:</h3>\n+ <p>Minimum ID: 40%</p>\n+ <p>Minimum Coverage: 50%</p>\n+ <p>Report Date: 2021-07-08 17:56:38</p>\n+ </div>\n+ <div>\n+ <h2>Table Summary</h2>\n+ <td><table border="1" class="dataframe">\n+ <thead>\n+ <tr style="text-align: right;">\n+ <th>staxids</th>\n+ <th>sscinames</th>\n+ <th>sskingdoms</th>\n+ <th>aaic</th>\n+ <th>aaibd</th>\n+ <th>hitspp</th>\n+ <th>match</th>\n+ <th>pmatch</th>\n+ </tr>\n+ </thead>\n+ <tbody>\n+ <tr>\n+ <td>889338</td>\n+ <td>Salmonella phage PVPSE1</td>\n+ <td>Viruses</td>\n+ <td>100.000</td>\n+ <td>100.000</td>\n+ <td>1.053</td>\n+ <td>244</td>\n+ <td>1.000</td>\n+ </tr>\n+ <tr>\n+ <td>1204529</td>\n+ <td>Salmonella phage SSE121</td>\n+ <td>Viruses</td>\n+ <td>88.471</td>\n+ <td>97.380</td>\n+ <td>0.959</td>\n+ <td>223</td>\n+ <td>0.914</td>\n+ </tr>\n+ <tr>\n+ <td>1391428</td>\n+ <td>Escherichia phage 4MG</td>\n+ <td>Viruses</td>\n+ <td>64.644</td>\n+ <td>79.041</td>\n+ <td>0.865</td>\n+ <td>204</td>\n+ <td>0.836</td>\n+ </tr>\n+ <tr>\n+ <td>1141135</td>\n+ <td>Cronobacter phage vB_CsaM_GAP31</td>\n+ <td>Viruses</td>\n+ <td>64.604</td>\n+ <td>79.259</td>\n+ <td>0.881</td>\n+ <td>205</td>\n+ <td>0.840</td>\n+ </tr>\n+ <tr>\n+ <td>1907784</td>\n+ <td>Klebsiella phage vB_KpnM_BIS47</td>\n+ <td>Viruses</td>\n+ <td>50.224</td>\n+ <td>70.825</td>\n+ <td>0.775</td>\n+ <td>183</td>\n+ <td>0.750</td>\n+ </tr>\n+ <tr>\n+ <td>2053702</td>\n+ <td>Raoultella phage Ro1</td>\n+ <td>Viruses</td>\n+ <td>50.051</td>\n+ <td>70.388</td>\n+ <td>0.824</td>\n+ <td>181</td>\n+ <td>0.742</td>\n+ </tr>\n+ <tr>\n+ <td>2723896</td>\n+ <td>Klebsiella virus KpS8</td>\n+ <td>Viruses</td>\n+ <td>49.892</td>\n+ <td>70.182</td>\n+ <td>0.754</td>\n+ <td>183</td>\n+ <td>0.750</td>\n+ </tr>\n+ <tr>\n+ <td>2483610</td>\n+ <td>Proteus phage Mydo</td>\n+ <td>Viruses</td>\n+ <td>49.667</td>\n+ <td>70.479</td>\n+ <td>0.750</td>\n+ <td>182</td>\n+ <td>0.746</td>\n+ </tr>\n+ <tr>\n+ <td>1719140</td>\n+ <td>Klebsiella phage vB_KpnM_KB57</td>\n+ <td>Viruses</td>\n+ <td>49.054</td>\n+ <td>70.663</td>\n+ <td>0.742</td>\n+ <td>178</td>\n+ <td>0.730</td>\n+ </tr>\n+ <tr>\n+ <td>2776831</td>\n+ <td>Klebsiella phage vB_KpnM_Seu621</td>\n+ <td>Viruses</td>\n+ <td>47.863</td>\n+ <td>70.764</td>\n+ <td>0.717</td>\n+ <td>174</td>\n+ <td>0.713</td>\n+ </tr>\n+ <tr>\n+ <td>2601643</td>\n+ <td>Erwinia phage pEp_SNUABM_01</td>\n+ <td>Viruses</td>\n+ <td>36.402</td>\n+ <td>60.756</td>\n+ <td>0.660</td>\n+ <td>157</td>\n+ <td>0.643</td>\n+ </tr>\n+ <tr>\n+ <td>2678601</td>\n+ <td>Erwinia phage Hena1</td>\n+ <td>Viruses</td>\n+ <td>35.469</td>\n+ <td>60.723</td>\n+ <td>0.635</td>\n+ <td>154</td>\n+ <td>0.631</td>\n+ </tr>\n+ <tr>\n+ <td>1527519</td>\n+ <td>Escherichia phage Av-05</td>\n+ <td>Viruses</td>\n+ <td>30.125</td>\n+ <td>65.980</td>\n+ <td>0.525</td>\n+ <td>119</td>\n+ <td>0.488</td>\n+ </tr>\n+ <tr>\n+ <td>1654893</td>\n+ <td>Salmonella phage 40</td>\n+ <td>Viruses</td>\n+ <td>24.107</td>\n+ <td>82.719</td>\n+ <td>0.426</td>\n+ <td>74</td>\n+ <td>0.303</td>\n+ </tr>\n+ <t'..b'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">\n+ </div>\n+ </div>\n+ </body>\n+</html>\n\\ No newline at end of file\n' |
| b |
| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report/coast_results.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report/coast_results.tab Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,5759 @@\n+staxids\tsscinames\tsskingdoms\taaic\taaibd\thitspp\tmatch\tpmatch\n+889338\tSalmonella phage PVPSE1\tViruses\t100.0\t100.0\t1.053\t244\t1.0\n+1204529\tSalmonella phage SSE121\tViruses\t88.471\t97.38\t0.959\t223\t0.9139344262295082\n+1391428\tEscherichia phage 4MG\tViruses\t64.644\t79.041\t0.865\t204\t0.8360655737704918\n+1141135\tCronobacter phage vB_CsaM_GAP31\tViruses\t64.604\t79.259\t0.881\t205\t0.8401639344262295\n+1907784\tKlebsiella phage vB_KpnM_BIS47\tViruses\t50.224\t70.825\t0.775\t183\t0.75\n+2053702\tRaoultella phage Ro1\tViruses\t50.051\t70.388\t0.824\t181\t0.7418032786885246\n+2723896\tKlebsiella virus KpS8\tViruses\t49.892\t70.182\t0.754\t183\t0.75\n+2483610\tProteus phage Mydo\tViruses\t49.667\t70.479\t0.75\t182\t0.7459016393442623\n+1719140\tKlebsiella phage vB_KpnM_KB57\tViruses\t49.054\t70.663\t0.742\t178\t0.7295081967213115\n+2776831\tKlebsiella phage vB_KpnM_Seu621\tViruses\t47.863\t70.764\t0.717\t174\t0.7131147540983607\n+2601643\tErwinia phage pEp_SNUABM_01\tViruses\t36.402\t60.756\t0.66\t157\t0.6434426229508197\n+2678601\tErwinia phage Hena1\tViruses\t35.469\t60.723\t0.635\t154\t0.6311475409836066\n+1527519\tEscherichia phage Av-05\tViruses\t30.125\t65.98\t0.525\t119\t0.48770491803278687\n+1654893\tSalmonella phage 40\tViruses\t24.107\t82.719\t0.426\t74\t0.30327868852459017\n+1131317\tEscherichia phage FV3\tViruses\t20.215\t54.723\t0.43\t101\t0.4139344262295082\n+2696406\tEscherichia phage ime\tViruses\t20.2\t55.069\t0.43\t101\t0.4139344262295082\n+2696409\tEscherichia phage isim\tViruses\t20.129\t54.502\t0.43\t101\t0.4139344262295082\n+2508197\tEscherichia phage vB_EcoM_HdK5\tViruses\t20.046\t54.743\t0.439\t100\t0.4098360655737705\n+1327956\tEscherichia phage JES2013\tViruses\t20.015\t54.716\t0.434\t100\t0.4098360655737705\n+2750849\tEscherichia phage vB_EcoM_Gotham\tViruses\t20.013\t55.164\t0.43\t100\t0.4098360655737705\n+1446490\tEscherichia phage FFH2\tViruses\t19.954\t55.163\t0.426\t100\t0.4098360655737705\n+2306966\tEscherichia phage vB_EcoM-Pr121LW\tViruses\t19.904\t55.102\t0.426\t99\t0.4057377049180328\n+2233993\tEscherichia phage LL12\tViruses\t19.893\t55.021\t0.422\t99\t0.4057377049180328\n+2696430\tEscherichia phage navn\tViruses\t19.88\t54.692\t0.426\t100\t0.4098360655737705\n+399183\tEscherichia phage V5\tViruses\t19.875\t54.693\t0.426\t99\t0.4057377049180328\n+1675606\tEscherichia phage Murica\tViruses\t19.868\t55.155\t0.422\t99\t0.4057377049180328\n+2048063\tPhage 206\tViruses\t19.853\t54.942\t0.422\t99\t0.4057377049180328\n+2048062\tPhage 203\tViruses\t19.853\t54.942\t0.422\t99\t0.4057377049180328\n+2576873\tEschericha phage vB_EcoM-ECP26\tViruses\t19.85\t54.862\t0.434\t99\t0.4057377049180328\n+2696428\tEscherichia phage naswa\tViruses\t19.849\t54.912\t0.426\t99\t0.4057377049180328\n+2696415\tEscherichia phage magaca\tViruses\t19.84\t54.881\t0.426\t99\t0.4057377049180328\n+2502307\tEscherichia phage EdH4\tViruses\t19.836\t55.02\t0.422\t99\t0.4057377049180328\n+1508679\tEscherichia coli O157 typing phage 4\tViruses\t19.835\t54.88\t0.434\t99\t0.4057377049180328\n+1655314\tEscherichia phage APECc02\tViruses\t19.819\t54.805\t0.426\t99\t0.4057377049180328\n+2695843\tEscherichia phage rV5_ev147\tViruses\t19.819\t54.29\t0.422\t99\t0.4057377049180328\n+2695842\tEscherichia phage rV5_ev156\tViruses\t19.819\t54.29\t0.422\t99\t0.4057377049180328\n+2695841\tEscherichia phage rV5_ev158\tViruses\t19.778\t54.244\t0.422\t99\t0.4057377049180328\n+2695851\tEscherichia phage rV5_ev168\tViruses\t19.778\t54.242\t0.422\t99\t0.4057377049180328\n+2696439\tEscherichia phage pangalan\tViruses\t19.764\t54.911\t0.422\t99\t0.4057377049180328\n+2763523\tEscherichia phage vb_EcoM_bov22_2\tViruses\t19.671\t54.571\t0.418\t98\t0.4016393442622951\n+2763522\tEscherichia phage vb_EcoM_bov11CS3\tViruses\t19.671\t54.571\t0.418\t98\t0.4016393442622951\n+2763521\tEscherichia phage vb_EcoM_bov10K2\tViruses\t19.671\t54.571\t0.418\t98\t0.4016393442622951\n+2696434\tEscherichia phage nom\tViruses\t19.618\t54.384\t0.418\t98\t0.4016393442622951\n+1508680\tEscherichia coli O157 typing phage 5\tViruses\t19.602\t54.734\t0.426\t98\t0.4016393442622951\n+2591055\tShigella phage CM1\tViruses\t19.577\t54.865\t0.418\t98\t0.4016393442622951\n+2695844\tEscherichia phage rV5_ev146\tViruses\t19.559\t55.007\t0.418\t98\t0.4016393442622951\n+2696408\tEscherichia phage inoa\tViruses\t19.549\t54.663\t0.4'..b'5\n+2136799\tCampylobacter phage CP39\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+328614\tHeliothis virescens ascovirus 3f\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+2749261\tSalmonella phage YSD1\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+756283\tProchlorococcus phage P-RSP2\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+1881331\tVibrio phage 1.118.A._10N.261.49.F6\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+1881332\tVibrio phage 1.118.B._10N.261.49.F6\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+1813781\tSalmonella phage 118970_sal1\tViruses\t0.094\t\t0.004\t1\t0.004098360655737705\n+2041476\tVibrio phage vB_VpaS_KF5\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+1273751\tHalovirus HHTV-2\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+2059877\tVibrio phage VVP001\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+2601627\tVibrio phage vB_VpaS_HCMJ\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+1161928\tVibrio phage SSP002\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+1960247\tuncultured archaeal virus\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+207597\tVibrio phage VHML\tViruses\t0.093\t\t0.004\t1\t0.004098360655737705\n+2079431\tLactobacillus phage Maenad\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2026944\tKlebsiella phage SopranoGao\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2070201\tLactobacillus phage Satyr\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+1541887\tSalmonella virus Chi\tViruses\t0.092\t\t0.008\t1\t0.004098360655737705\n+11723\tSimian immunodeficiency virus\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+1541686\tCampylobacter phage PC14\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+934027\tCampylobacter virus NCTC12673\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2315705\tMicrobacterium phage ValentiniPuff\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+1173755\tSalmonella phage FSL SP-039\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2723759\tKlebsiella phage SJM3\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+1173754\tSalmonella virus FSLSP030\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2723758\tKlebsiella phage LASTA\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2500556\tSalmonella phage Season12\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2506587\tPithovirus LCPAC102\tViruses\t0.092\t\t0.004\t1\t0.004098360655737705\n+2768133\tArthrobacter phage Tweety19\tViruses\t0.091\t\t0.004\t1\t0.004098360655737705\n+2686379\tLactobacillus phage JNU_P1\tViruses\t0.091\t\t0.004\t1\t0.004098360655737705\n+2041487\tPseudomonas phage VW-6S\tViruses\t0.091\t\t0.004\t1\t0.004098360655737705\n+1229754\tVibrio phage vB_VpaM_MAR\tViruses\t0.091\t\t0.004\t1\t0.004098360655737705\n+631719\tVibrio phage VP585\tViruses\t0.091\t\t0.004\t1\t0.004098360655737705\n+2506601\tPithovirus LCDPAC02\tViruses\t0.091\t\t0.004\t1\t0.004098360655737705\n+2772077\tcrAssphage cr127_1\tViruses\t0.09\t\t0.004\t1\t0.004098360655737705\n+1970788\tWeissella phage PWc\tViruses\t0.09\t\t0.004\t1\t0.004098360655737705\n+2506589\tPithovirus LCPAC104\tViruses\t0.089\t\t0.004\t1\t0.004098360655737705\n+2510451\tAeromonas phage MJG\tViruses\t0.089\t\t0.004\t1\t0.004098360655737705\n+2218618\tRuegeria phage vB_RpoS-V16\tViruses\t0.089\t\t0.004\t1\t0.004098360655737705\n+941970\tLiberibacter phage SC2\tViruses\t0.089\t\t0.004\t1\t0.004098360655737705\n+1503929\tAurantimonas phage AmM-1\tViruses\t0.088\t\t0.004\t1\t0.004098360655737705\n+449720\tCotesia vestalis bracovirus\tViruses\t0.087\t\t0.004\t1\t0.004098360655737705\n+2070187\tFaecalibacterium phage FP_Toutatis\tViruses\t0.086\t\t0.004\t1\t0.004098360655737705\n+1735561\tBacillus phage BMBtp1\tViruses\t0.086\t\t0.004\t1\t0.004098360655737705\n+1092848\tAcinetobacter phage Abp53\tViruses\t0.086\t\t0.004\t1\t0.004098360655737705\n+1881291\tVibrio phage 1.016.O._10N.286.46.A11\tViruses\t0.084\t\t0.004\t1\t0.004098360655737705\n+1881313\tVibrio phage 1.071.A._10N.286.46.A12\tViruses\t0.084\t\t0.004\t1\t0.004098360655737705\n+2059380\tFlamingopox virus FGPVKD09\tViruses\t0.083\t\t0.004\t1\t0.004098360655737705\n+1846168\tLactobacillus phage P1\tViruses\t0.083\t\t0.004\t1\t0.004098360655737705\n+1928330\tLactobacillus phage P2\tViruses\t0.083\t\t0.004\t1\t0.004098360655737705\n+1633782\tListeria phage LWP01\tViruses\t0.082\t\t0.004\t1\t0.004098360655737705\n' |
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| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report/heatmap_plot.png |
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| Binary file test-data/report/heatmap_plot.png has changed |
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| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report_h/bh_results.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_h/bh_results.tab Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,17790 @@\n+rel_pos\tqseqid\tqlength\tstaxids\tqlen\tsseqid\tsallseqid\tslen\tqstart\tqend\tsstart\tsend\tevalue\tbitscore\tscore\tlength\tpident\tnident\tsscinames\tsskingdoms\tstitle\tqcovs\n+1\tYP_004893808.1\t664\t2675448\t664.0\ttr|A0A345MKZ6|A0A345MKZ6_9CAUD\ttr|A0A345MKZ6|A0A345MKZ6_9CAUD\t840.0\t26.0\t355.0\t28.0\t365.0\t7.65e-19\t97.8\t242.0\t347.0\t24.207\t84.0\tPodoviridae sp. ctda_1\tViruses\tRIIA protein OS=Podoviridae sp. ctda_1 OX=2675448 PE=4 SV=1\t50.0\n+1\tYP_004893808.1\t664\t2065203\t664.0\ttr|A0A2I6PFZ2|A0A2I6PFZ2_9CAUD\ttr|A0A2I6PFZ2|A0A2I6PFZ2_9CAUD\t681.0\t23.0\t345.0\t22.0\t337.0\t5.98e-19\t97.8\t242.0\t332.0\t25.602\t85.0\tProteus phage phiP4-3\tViruses\tRIIA protein OS=Proteus phage phiP4-3 OX=2065203 GN=phiP43_268 PE=4 SV=1\t49.0\n+1\tYP_004893808.1\t664\t2025809\t664.0\ttr|A0A249XX12|A0A249XX12_9CAUD\ttr|A0A249XX12|A0A249XX12_9CAUD\t681.0\t23.0\t325.0\t22.0\t316.0\t1.61e-19\t99.8\t247.0\t312.0\t25.641\t80.0\tProteus phage PM2\tViruses\tUncharacterized protein OS=Proteus phage PM2 OX=2025809 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2742944\t664.0\ttr|A0A653FXI0|A0A653FXI0_9CAUD\ttr|A0A653FXI0|A0A653FXI0_9CAUD\t629.0\t1.0\t323.0\t1.0\t325.0\t7.75e-19\t97.4\t241.0\t342.0\t25.731\t88.0\tEscherichia phage T4_ev151\tViruses\tPhage rIIA lysis inhibitor (Fragment) OS=Escherichia phage T4_ev151 OX=2742944 PE=4 SV=1\t49.0\n+1\tYP_004893808.1\t664\t645664\t664.0\ttr|E3SF90|E3SF90_9CAUD\ttr|E3SF90|E3SF90_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t5.040000000000001e-21\t104.0\t259.0\t322.0\t25.776\t83.0\tShigella phage SP18\tViruses\tRIIA protector from prophage-induced early lysis OS=Shigella phage SP18 OX=645664 GN=rIIA PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2744001\t664.0\ttr|A0A7D7IBC1|A0A7D7IBC1_9CAUD\ttr|A0A7D7IBC1|A0A7D7IBC1_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t4.27e-21\t104.0\t260.0\t322.0\t25.776\t83.0\tEscherichia phage CJ20\tViruses\tRIIA protector from prophage-induced early lysis OS=Escherichia phage CJ20 OX=2744001 GN=CJ20_047 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t754058\t664.0\ttr|M4QQI8|M4QQI8_9CAUD\ttr|M4QQI8|M4QQI8_9CAUD\t716.0\t7.0\t278.0\t8.0\t294.0\t1.43e-19\t99.8\t247.0\t287.0\t25.784\t74.0\tVibrio phage PWH3a-P1\tViruses\tRIIA OS=Vibrio phage PWH3a-P1 OX=754058 GN=VPIG_00087 PE=4 SV=1\t41.0\n+1\tYP_004893808.1\t664\t1567029\t664.0\ttr|A0A0A7HDB1|A0A0A7HDB1_9CAUD\ttr|A0A0A7HDB1|A0A0A7HDB1_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t2.6200000000000003e-21\t105.0\t262.0\t331.0\t25.982\t86.0\tEscherichia phage vB_EcoM_VR26\tViruses\tProtector from prophage-induced early lysis OS=Escherichia phage vB_EcoM_VR26 OX=1567029 GN=rIIA PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t1636250\t664.0\ttr|A0A0G2SS18|A0A0G2SS18_9CAUD\ttr|A0A0G2SS18|A0A0G2SS18_9CAUD\t681.0\t23.0\t325.0\t22.0\t316.0\t1.12e-19\t100.0\t248.0\t311.0\t26.045\t81.0\tProteus phage vB_PmiM_Pm5461\tViruses\tRIIA protein OS=Proteus phage vB_PmiM_Pm5461 OX=1636250 GN=Pm5461_001 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2746075\t664.0\ttr|A0A7G5BC88|A0A7G5BC88_9CAUD\ttr|A0A7G5BC88|A0A7G5BC88_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t3.0900000000000003e-21\t105.0\t261.0\t329.0\t26.14\t86.0\tEscherichia phage DK-13\tViruses\tProtector from prophage-induced early lysis OS=Escherichia phage DK-13 OX=2746075 PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t1567027\t664.0\ttr|A0A0A7HFR0|A0A0A7HFR0_9CAUD\ttr|A0A0A7HFR0|A0A0A7HFR0_9CAUD\t744.0\t1.0\t307.0\t1.0\t312.0\t3.46e-21\t105.0\t261.0\t329.0\t26.14\t86.0\tEscherichia phage vB_EcoM_VR20\tViruses\tProtector from prophage-induced early lysis OS=Escherichia phage vB_EcoM_VR20 OX=1567027 GN=rIIA PE=4 SV=1\t46.0\n+1\tYP_004893808.1\t664\t2587809\t664.0\ttr|A0A4Y5TQM8|A0A4Y5TQM8_9CAUD\ttr|A0A4Y5TQM8|A0A4Y5TQM8_9CAUD\t715.0\t23.0\t310.0\t22.0\t306.0\t1.94e-21\t105.0\t263.0\t297.0\t26.263\t78.0\tKlebsiella phage Marfa\tViruses\tProtector from prophage induced early lysis OS=Klebsiella phage Marfa OX=2587809 GN=CPT_Marfa_001 PE=4 SV=1\t43.0\n+1\tYP_004893808.1\t664\t2283305\t664.0\ttr|A0A345ME70|A0A345ME70_9CAUD\ttr|A0A345ME70|A0A345ME70_9CAUD\t641.0\t27.0\t486.0\t29.0\t475.0\t2.86e-19\t98.6\t244.0\t479.0\t26.305\t126.0\tStreptomyces phage SparkleGoddess\tViruses\tRIIA-like protein OS=Streptomyces phage SparkleGoddess OX=2283305 GN=165 PE=4 SV=1\t69.0\n+1\tYP_004893808.1\t664\t2301714\t664.0\ttr|A0A385DXH7|A0A38'..b'B9J5Q7|A0A6B9J5Q7_9CAUD\ttr|A0A6B9J5Q7|A0A6B9J5Q7_9CAUD\t171.0\t10.0\t174.0\t4.0\t168.0\t6.010000000000001e-88\t260.0\t664.0\t165.0\t69.697\t115.0\tErwinia phage Hena1\tViruses\tCell wall hydrolase OS=Erwinia phage Hena1 OX=2678601 GN=Hena1_02100 PE=4 SV=1\t92.0\n+51\tYP_004894050.1\t180\t2601643\t180.0\ttr|A0A5J6DAH8|A0A5J6DAH8_9CAUD\ttr|A0A5J6DAH8|A0A5J6DAH8_9CAUD\t174.0\t10.0\t179.0\t4.0\t173.0\t2.75e-94\t276.0\t706.0\t170.0\t71.765\t122.0\tErwinia phage pEp_SNUABM_01\tViruses\tPutative cell wall hydrolase OS=Erwinia phage pEp_SNUABM_01 OX=2601643 GN=pEpSNUABM01_024 PE=4 SV=1\t94.0\n+51\tYP_004894050.1\t180\t1907784\t180.0\ttr|A0A1V0E780|A0A1V0E780_9CAUD\ttr|A0A1V0E780|A0A1V0E780_9CAUD\t127.0\t54.0\t180.0\t1.0\t127.0\t1.9600000000000001e-75\t227.0\t578.0\t127.0\t81.89\t104.0\tKlebsiella phage vB_KpnM_BIS47\tViruses\tCell wall hydrolase OS=Klebsiella phage vB_KpnM_BIS47 OX=1907784 GN=BIS47_241 PE=4 SV=1\t71.0\n+51\tYP_004894050.1\t180\t2053702\t180.0\ttr|A0A2H4YGE3|A0A2H4YGE3_9CAUD\ttr|A0A2H4YGE3|A0A2H4YGE3_9CAUD\t175.0\t5.0\t180.0\t1.0\t175.0\t3.88e-106\t306.0\t784.0\t176.0\t82.386\t145.0\tRaoultella phage Ro1\tViruses\tPutative cell wall hydrolyse OS=Raoultella phage Ro1 OX=2053702 GN=Ro1_00003 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t2483610\t180.0\ttr|A0A3G8F107|A0A3G8F107_9CAUD\ttr|A0A3G8F107|A0A3G8F107_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t1.82e-109\t315.0\t806.0\t176.0\t82.955\t146.0\tProteus phage Mydo\tViruses\tEndolysin OS=Proteus phage Mydo OX=2483610 GN=CPT_Mydo_014 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t1719140\t180.0\ttr|A0A0S1S1U5|A0A0S1S1U5_9CAUD\ttr|A0A0S1S1U5|A0A0S1S1U5_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.98e-110\t317.0\t811.0\t176.0\t84.091\t148.0\tKlebsiella phage vB_KpnM_KB57\tViruses\tPutative cell wall hydrolyse OS=Klebsiella phage vB_KpnM_KB57 OX=1719140 GN=KB57_245 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t2723896\t180.0\ttr|A0A6H0X4L9|A0A6H0X4L9_9CAUD\ttr|A0A6H0X4L9|A0A6H0X4L9_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.98e-110\t317.0\t811.0\t176.0\t84.091\t148.0\tKlebsiella virus KpS8\tViruses\tCell wall hydrolase OS=Klebsiella virus KpS8 OX=2723896 GN=kps8_261 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t2776831\t180.0\ttr|A0A7L8ZIE2|A0A7L8ZIE2_9CAUD\ttr|A0A7L8ZIE2|A0A7L8ZIE2_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.98e-110\t317.0\t811.0\t176.0\t84.091\t148.0\tKlebsiella phage vB_KpnM_Seu621\tViruses\tPutative cell wall hydrolyse OS=Klebsiella phage vB_KpnM_Seu621 OX=2776831 GN=phage621_00266 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t1391428\t180.0\ttr|V5KSH0|V5KSH0_9CAUD\ttr|V5KSH0|V5KSH0_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t6.0599999999999996e-111\t318.0\t816.0\t176.0\t84.659\t149.0\tEscherichia phage 4MG\tViruses\tCell wall hydrolase SleB OS=Escherichia phage 4MG OX=1391428 GN=4MG_270 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t1141135\t180.0\ttr|K4F513|K4F513_9CAUD\ttr|K4F513|K4F513_9CAUD\t180.0\t1.0\t180.0\t1.0\t180.0\t4.53e-114\t327.0\t837.0\t180.0\t85.0\t153.0\tCronobacter phage vB_CsaM_GAP31\tViruses\tCell wall hydrolase SleB OS=Cronobacter phage vB_CsaM_GAP31 OX=1141135 GN=GAP31_003 PE=4 SV=1\t100.0\n+51\tYP_004894050.1\t180\t1654894\t180.0\ttr|A0A0N7CDI5|A0A0N7CDI5_9CAUD\ttr|A0A0N7CDI5|A0A0N7CDI5_9CAUD\t46.0\t49.0\t77.0\t16.0\t44.0\t3.17e-12\t63.9\t154.0\t29.0\t93.103\t27.0\tSalmonella phage 41\tViruses\tPutative terminase small subunit OS=Salmonella phage 41 OX=1654894 GN=SP41_116 PE=4 SV=1\t16.0\n+51\tYP_004894050.1\t180\t1654893\t180.0\ttr|A0A0N6WG74|A0A0N6WG74_9CAUD\ttr|A0A0N6WG74|A0A0N6WG74_9CAUD\t145.0\t36.0\t179.0\t1.0\t144.0\t5.44e-102\t295.0\t754.0\t144.0\t95.139\t137.0\tSalmonella phage 40\tViruses\tHydrolase_2 domain-containing protein OS=Salmonella phage 40 OX=1654893 GN=SP40_78 PE=4 SV=1\t80.0\n+51\tYP_004894050.1\t180\t1204529\t180.0\ttr|K4I256|K4I256_9CAUD\ttr|K4I256|K4I256_9CAUD\t176.0\t5.0\t180.0\t1.0\t176.0\t2.92e-129\t365.0\t936.0\t176.0\t99.432\t175.0\tSalmonella phage SSE121\tViruses\tHydrolase_2 domain-containing protein OS=Salmonella phage SSE121 OX=1204529 PE=4 SV=1\t98.0\n+51\tYP_004894050.1\t180\t889338\t180.0\ttr|G3BMA9|G3BMA9_9CAUD\ttr|G3BMA9|G3BMA9_9CAUD\t180.0\t1.0\t180.0\t1.0\t180.0\t3.98e-133\t375.0\t962.0\t180.0\t100.0\t180.0\tSalmonella phage PVPSE1\tViruses\tCell wall hydrolase SleB OS=Salmonella phage PVPSE1 OX=889338 GN=243 PE=4 SV=1\t100.0\n' |
| b |
| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report_h/coast_report.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_h/coast_report.html Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,1017 @@\n+<!DOCTYPE html>\n+<html>\n+ <head>\n+ <title>COAST Report</title>\n+ </head>\n+ <body>\n+ <div id="header">\n+ <h1>COAST Report</h1>\n+ </div>\n+ <div class="body">\n+ <div>\n+ <h2>Query Summary</h2>\n+ <p>Organism: Unknown</p>\n+ <p>Number of proteins: 51</p>\n+ <h3>AAIc settings:</h3>\n+ <p>AAIc filter: 20%</p>\n+ <h3>AAIbd settings:</h3>\n+ <p>Minimum ID: 30%</p>\n+ <p>Minimum Coverage: 30%</p>\n+ <p>Report Date: 2021-07-08 18:50:23</p>\n+ </div>\n+ <div>\n+ <h2>Table Summary</h2>\n+ <td><table border="1" class="dataframe">\n+ <thead>\n+ <tr style="text-align: right;">\n+ <th>staxids</th>\n+ <th>sscinames</th>\n+ <th>sskingdoms</th>\n+ <th>aaic</th>\n+ <th>aaibd</th>\n+ <th>hitspp</th>\n+ <th>match</th>\n+ <th>pmatch</th>\n+ </tr>\n+ </thead>\n+ <tbody>\n+ <tr>\n+ <td>889338</td>\n+ <td>Salmonella phage PVPSE1</td>\n+ <td>Viruses</td>\n+ <td>100.000</td>\n+ <td>100.000</td>\n+ <td>5.039</td>\n+ <td>51</td>\n+ <td>1.000</td>\n+ </tr>\n+ <tr>\n+ <td>1204529</td>\n+ <td>Salmonella phage SSE121</td>\n+ <td>Viruses</td>\n+ <td>96.082</td>\n+ <td>97.380</td>\n+ <td>4.588</td>\n+ <td>50</td>\n+ <td>0.980</td>\n+ </tr>\n+ <tr>\n+ <td>1391428</td>\n+ <td>Escherichia phage 4MG</td>\n+ <td>Viruses</td>\n+ <td>68.310</td>\n+ <td>79.041</td>\n+ <td>4.137</td>\n+ <td>41</td>\n+ <td>0.804</td>\n+ </tr>\n+ <tr>\n+ <td>1141135</td>\n+ <td>Cronobacter phage vB_CsaM_GAP31</td>\n+ <td>Viruses</td>\n+ <td>66.767</td>\n+ <td>79.259</td>\n+ <td>4.216</td>\n+ <td>40</td>\n+ <td>0.784</td>\n+ </tr>\n+ <tr>\n+ <td>2053702</td>\n+ <td>Raoultella phage Ro1</td>\n+ <td>Viruses</td>\n+ <td>65.520</td>\n+ <td>70.388</td>\n+ <td>3.941</td>\n+ <td>45</td>\n+ <td>0.882</td>\n+ </tr>\n+ <tr>\n+ <td>2483610</td>\n+ <td>Proteus phage Mydo</td>\n+ <td>Viruses</td>\n+ <td>63.177</td>\n+ <td>70.479</td>\n+ <td>3.588</td>\n+ <td>43</td>\n+ <td>0.843</td>\n+ </tr>\n+ <tr>\n+ <td>2723896</td>\n+ <td>Klebsiella virus KpS8</td>\n+ <td>Viruses</td>\n+ <td>63.111</td>\n+ <td>70.182</td>\n+ <td>3.608</td>\n+ <td>43</td>\n+ <td>0.843</td>\n+ </tr>\n+ <tr>\n+ <td>1907784</td>\n+ <td>Klebsiella phage vB_KpnM_BIS47</td>\n+ <td>Viruses</td>\n+ <td>62.619</td>\n+ <td>70.825</td>\n+ <td>3.706</td>\n+ <td>42</td>\n+ <td>0.824</td>\n+ </tr>\n+ <tr>\n+ <td>2776831</td>\n+ <td>Klebsiella phage vB_KpnM_Seu621</td>\n+ <td>Viruses</td>\n+ <td>62.488</td>\n+ <td>70.764</td>\n+ <td>3.431</td>\n+ <td>42</td>\n+ <td>0.824</td>\n+ </tr>\n+ <tr>\n+ <td>1719140</td>\n+ <td>Klebsiella phage vB_KpnM_KB57</td>\n+ <td>Viruses</td>\n+ <td>62.168</td>\n+ <td>70.663</td>\n+ <td>3.549</td>\n+ <td>42</td>\n+ <td>0.824</td>\n+ </tr>\n+ <tr>\n+ <td>2678601</td>\n+ <td>Erwinia phage Hena1</td>\n+ <td>Viruses</td>\n+ <td>46.232</td>\n+ <td>60.723</td>\n+ <td>3.039</td>\n+ <td>38</td>\n+ <td>0.745</td>\n+ </tr>\n+ <tr>\n+ <td>2601643</td>\n+ <td>Erwinia phage pEp_SNUABM_01</td>\n+ <td>Viruses</td>\n+ <td>46.012</td>\n+ <td>60.756</td>\n+ <td>3.157</td>\n+ <td>38</td>\n+ <td>0.745</td>\n+ </tr>\n+ <tr>\n+ <td>2696409</td>\n+ <td>Escherichia phage isim</td>\n+ <td>Viruses</td>\n+ <td>38.669</td>\n+ <td>54.502</td>\n+ <td>2.059</td>\n+ <td>37</td>\n+ <td>0.725</td>\n+ </tr>\n+ <tr>\n+ <td>2696406</td>\n+ <td>Escherichia phage ime</td>\n+ <td>Viruses</td>\n+ <td>37.710</td>\n+ <td>55.069</td>\n+ <td>2.059</td>\n+ <td>36</td>\n+ <td>0.706</td>\n+ </tr>\n+ <tr>\n+ <td'..b'3MTDd1gNnjY86oSnXsqO4b1PjM4Wa9xqUrtqtjV/6p1Yi9NqRUHXtd2w4jdmxlkTr29RebjNjdY9WhqjfejKrxfqeZN/j/+cLeqR9YRO5+bqCr8Z9U8+tdanzH2y1GbFeLec5ERMq7pf49aPUFqb++G/681Yit/6WLE+/SY2vNz2BhSK8v+Up1lRGb+Bv9XK4833zNc18zX5uIyD3jjjFiO1tC6ljNO3sLUx4L/2MFAgCwQgIBAFghgQAArJBAAABWSCAAACskEACAFRIIAMCKqzoQp5oPzdn9h6Y8tuHzm91MI2XLtxUbse3N+v3vz76k3+v++pnbjNjXhx1WxxaHzOebMfigOnbZFrPm45iSmDp2+AV6fUiqTjkposbDAfP5Tn1WryU4a7BZ4yIi8us7zfNTduEQdex3J5jnYvUF1erYq/ubtSsPjO+rjh00X6/L0Yz7lfn6wg5lDjOGxlM+7uBb6tX4xtv016eZOVw/b6nS6j2caPUeTnoUpn4eju+uf07QMbECAQBYIYEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGDFVR3IdKUfyBIX/UCcakMWL00YsZtPdDMz3eR+Zj+QeWP0fiB72z5Q4w+M72/ELqgzz4OIyOt/OmTEVg/V+4HEomafh5Oq9Xy+crlZP3HXKepQ1V/e1utLCk8yn891P5AlbvqBmJ8Vpx4WW/9i9gPZ7dAPpHuP1L8Hvfal1F/fd1brNUMaN/UeTrR+IP2Kzd8NEZGpx5jPN+E5/Vy+OiO9fiCbPky9H8i7+8zePui4WIEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGCFBAIAsOKqDiQUNGsXMiKRneNGXKTHlngg5bFdwvq9+RI2nzCQ+mHlcMxhwkEXB1EEovp8gwHvvz+0tTk84GJqCYe3I10l4Sx93h1ovwZ7W1N/74Opl2u4+l0uK0n9uMlkep9V+Iv3f4MAAHyJBAIAsEICAQBYIYEAAKyQQAAAVkggAAArJBAAgBVXdSDRRMe9x/uECqeChDyQpTqZfBB0U++RvWmocv15T7PcR5JZOkEd+OOHNLECAQBYIYEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGDFVR3Ib87pk/LYs/sPTXnsf37BRSMDFx79a6ERCwc3qmNDDo07vvLH7Ubs2585qI4tDpmNE2YM1scu21JkxMoL4urYIV/sosZTtem/BqY8tvJHW9X4xWfqxQC/vmObEev+lSp17H+fesCIrb6gWh37zT4xI/bTiX3VsZW3b1LjmlOe2WnESkr171FfHxE1YtVfeV0dm+ypv0cNC45LeW4zhw9Jeaxm1fTeKY+9e2zqn4miUOqFIBP7tKQ8Fv7HCgQAYIUEAgCwQgIBAFghgQAArJBAAABWSCAAACskEACAFVd1INnSu4te/5ANMZc9HtzcA98p5UOziHz4GhTPdbcSwHv58KsHAPAhEggAwAoJBABghQQCALBCAgEAWCGBAACskEAAAFbyog5k1+Hs9APRTBvYqsbrPijI2RzyWaDZ7IHxEYePSshdXU1W5LIEI+lQ9xLiuxg6Hz71AAArJBAAgBUSCADACgkEAGCFBAIAsEICAQBYIYEAAKzkRR1ILuW6fUXc4fmCgTzoo6EI9+ni8IhTfYjp0MH0CzPCweycn0AwzbqVgMPP0w9ERPKjPQxyhxUIAMAKCQQAYIUEAgCwQgIBAFghgQAArJBAAABWSCAAACt5UQdyet82r6eQNU7tMhLJPOijoYgeiLn7AeW+/0yURMQSLs6Pi69BSbVQIQPvBf1AREQk3TIb+AufWDP3UQAABgZJREFUegCAFRIIAMAKCQQAYIUEAgCwQgIBAFghgQAArJBAAABW8qIOpCPzWz+QTOhamuNigHxoxdGB+4G0uajJoR9I58IKBABghQQCALBCAgEAWCGBAACskEAAAFZIIAAAKyQQAICVvKgDWbM/ZMQm9Uv/uOXlZn6s+6BAHfvjJ/SeJGfV6uNT5bd+IMkC870QEeldpJ+f9c/XGLGxv9yV0TnZuOmvWxweSe/9dHxDO3A/kIIgxR3QddxPPQAgq0ggAAArJBAAgBUSCADACgkEAGCFBAIAsEICAQBYyYs6kBHl8awcd/9+s0fD5P56PUPwcr0+4M096c3Bb/1AAm36e7GrRf+uMfSLq41Yt4uHZHRONu44ZaAa/7/1O9M7sNMb2oH7gQBOWIEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGCFBAIAsJIXdSAdmVP7iA7DZ68vkaVyDac+KkBHxgoEAGCFBAIAsEICAQBYIYEAAKyQQAAAVkggAAArJBAAgBXqQD5FS9xnhQ65lqW2JuGgiwO7+BpUVJSd99OpjwrQkbECAQBYIYEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGClQ9eBlJennx+LQtkpdEgkO0h9SSI75yeWcHF+XPT4aGsz5xspcPFcSYfXG+K7mIhIsIN8rJEaPvUAACskEACAFRIIAMAKCQQAYIUEAgCwQgIBAFghgQAArLiqA5n/7kYjdu3IwWlPojicnVqCgkLzpvTjuw9Xx/5s7VY1/ujp/Y3Y77etV8e+viVkxOoPlKljtfqScFB/O0rCLgod0vSdaXpfi9nHV6rxu3870MXR+xiRwbduUEc+e2XMiC3fWq+OLR1QkvIMuhSbn4nSAv3zd2w3cw4l5+qvd/Qg/T2q/JH+udL0PCZixF7/D/OcufXWnrVGbG+r/t3x7P5Djdhvzkl9Dq20RelUWIEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGCFBAIAsBJIJtdkpwgjS054aqcRe+uS9O+Vd9JzxINGrGLuDHXslu8/lPJxK8rMepRQyKwDEBHZd2CjEWtquCHl53JSddXfjVjDwuPTPm6uDTvzj0Zs3R/PTPu4o580P2vvXJa9z1q6Bt+s18lsvL3aiE14bpc69tUZvVN+vuETXzJia1eenfLP//MoLscjn7ACAQBYIYEAAKyQQAAAVkggAAArJBAAgBUSCADACgkEAGAlL+pAVmw3+2tM6mf2JXBLu9f9yyOa1bE/fqJNjZ9VW2rEZg47pI59cr3Zl2LG4MPq2GVbioxYeYHeTOFwzMzz94w7Rh2brkHzt6vxa8/Wz8+cUWafkJN/btZPiIjcPP6gEZs+2KxREBH55soPjNhPJ5q9WUREKm/fZMQ23az3LznlGXNuJaX696ivjzDne9v39qpjkz27qPGGBcepcT85/0X9/dT6hNz3d/O9EBH5zvGD1HhARthPDJ5jBQIAsEICAQBYIYEAAKyQQAAAVkggAAArJBAAgBUSCADASvgHb5v3bc8bo99Dr7nzLf2+7zE9YkZs8RqzpkJE5GvDAik/n0arIxEReXWGWUvym016z4QNd+t9Cb6zeqsRa4rqedepTkHTu2idETup5zB1rNO99Zrvvr7ZiLXG9fmOKI8asc3XDlHHap8TEZEpyxuN2Ov/offMqPm1+T5PH6wOlQEl5udHe20iIifUmDU1Tv0u/nqxObeLX96hjq0oTBix+qdPVsc6OWuZeX6cvHxuL1fHTtUz9Q1GrHcX87WJiKzYUWDEfnOOXsOh2dXCd9LOhHcbAGCFBAIAsEICAQBYIYEAAKyQQAAAVkggAAArJBAAgJUO3Q9k5GP6/f2/+GKTEXt5u3n/u4jIm3vMeEfuByIiUnmn0l/jv1OvDRqxWD/vPzjHPG8Z6QfiYr5jf2nWhxQX63VIWj8QEZHbbtljxJK9itWxna0fiIhet0Q/kI6p061AtOSBf9H+Msa/aMkD/+Km6BX+1+kSCAAgM0ggAAArJBAAgBUSCADACgkEAGCFBAIAsEICAQBY+f9LZoYo3DGKbAAAAABJRU5ErkJggg==">\n+ </div>\n+ </div>\n+ </body>\n+</html>\n\\ No newline at end of file\n' |
| b |
| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report_h/coast_results.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report_h/coast_results.tab Thu Jul 08 18:14:50 2021 +0000 |
| b |
| b'@@ -0,0 +1,4134 @@\n+staxids\tsscinames\tsskingdoms\taaic\taaibd\thitspp\tmatch\tpmatch\n+889338\tSalmonella phage PVPSE1\tViruses\t100.0\t100.0\t5.039\t51\t1.0\n+1204529\tSalmonella phage SSE121\tViruses\t96.082\t97.38\t4.588\t50\t0.9803921568627451\n+1391428\tEscherichia phage 4MG\tViruses\t68.31\t79.041\t4.137\t41\t0.803921568627451\n+1141135\tCronobacter phage vB_CsaM_GAP31\tViruses\t66.767\t79.259\t4.216\t40\t0.7843137254901961\n+2053702\tRaoultella phage Ro1\tViruses\t65.52\t70.388\t3.941\t45\t0.8823529411764706\n+2483610\tProteus phage Mydo\tViruses\t63.177\t70.479\t3.588\t43\t0.8431372549019608\n+2723896\tKlebsiella virus KpS8\tViruses\t63.111\t70.182\t3.608\t43\t0.8431372549019608\n+1907784\tKlebsiella phage vB_KpnM_BIS47\tViruses\t62.619\t70.825\t3.706\t42\t0.8235294117647058\n+2776831\tKlebsiella phage vB_KpnM_Seu621\tViruses\t62.488\t70.764\t3.431\t42\t0.8235294117647058\n+1719140\tKlebsiella phage vB_KpnM_KB57\tViruses\t62.168\t70.663\t3.549\t42\t0.8235294117647058\n+2678601\tErwinia phage Hena1\tViruses\t46.232\t60.723\t3.039\t38\t0.7450980392156863\n+2601643\tErwinia phage pEp_SNUABM_01\tViruses\t46.012\t60.756\t3.157\t38\t0.7450980392156863\n+2696409\tEscherichia phage isim\tViruses\t38.669\t54.502\t2.059\t37\t0.7254901960784313\n+2696406\tEscherichia phage ime\tViruses\t37.71\t55.069\t2.059\t36\t0.7058823529411765\n+1131317\tEscherichia phage FV3\tViruses\t37.686\t54.723\t2.059\t36\t0.7058823529411765\n+1446490\tEscherichia phage FFH2\tViruses\t37.603\t55.163\t2.039\t36\t0.7058823529411765\n+2048063\tPhage 206\tViruses\t37.6\t54.942\t2.02\t36\t0.7058823529411765\n+2048062\tPhage 203\tViruses\t37.6\t54.942\t2.02\t36\t0.7058823529411765\n+2508197\tEscherichia phage vB_EcoM_HdK5\tViruses\t37.134\t54.743\t2.098\t35\t0.6862745098039216\n+2696433\tEscherichia phage nimi\tViruses\t37.067\t54.617\t1.98\t35\t0.6862745098039216\n+1508679\tEscherichia coli O157 typing phage 4\tViruses\t36.913\t54.88\t2.078\t35\t0.6862745098039216\n+1655314\tEscherichia phage APECc02\tViruses\t36.803\t54.805\t2.039\t35\t0.6862745098039216\n+1327956\tEscherichia phage JES2013\tViruses\t36.795\t54.716\t2.078\t35\t0.6862745098039216\n+2591055\tShigella phage CM1\tViruses\t36.729\t54.865\t2.0\t35\t0.6862745098039216\n+2696434\tEscherichia phage nom\tViruses\t36.586\t54.384\t2.0\t34\t0.6666666666666666\n+2576873\tEschericha phage vB_EcoM-ECP26\tViruses\t36.441\t54.862\t2.078\t34\t0.6666666666666666\n+2306966\tEscherichia phage vB_EcoM-Pr121LW\tViruses\t36.344\t55.102\t2.039\t34\t0.6666666666666666\n+1675606\tEscherichia phage Murica\tViruses\t36.31\t55.155\t2.02\t34\t0.6666666666666666\n+2696415\tEscherichia phage magaca\tViruses\t36.298\t54.881\t2.039\t34\t0.6666666666666666\n+2696430\tEscherichia phage navn\tViruses\t36.273\t54.692\t2.039\t35\t0.6862745098039216\n+2696436\tEscherichia phage nomo\tViruses\t36.265\t54.991\t2.0\t34\t0.6666666666666666\n+1720503\tEscherichia phage slur12\tViruses\t36.249\t54.702\t1.98\t34\t0.6666666666666666\n+1720495\tEscherichia phage slur16\tViruses\t36.246\t54.695\t1.98\t34\t0.6666666666666666\n+1508676\tEscherichia coli O157 typing phage 14\tViruses\t36.225\t54.923\t2.0\t34\t0.6666666666666666\n+2750849\tEscherichia phage vB_EcoM_Gotham\tViruses\t36.224\t55.164\t2.059\t34\t0.6666666666666666\n+2696427\tEscherichia phage naam\tViruses\t36.221\t54.709\t2.0\t34\t0.6666666666666666\n+1508680\tEscherichia coli O157 typing phage 5\tViruses\t36.202\t54.734\t2.039\t34\t0.6666666666666666\n+2696435\tEscherichia phage nomine\tViruses\t36.2\t55.232\t1.98\t34\t0.6666666666666666\n+2696428\tEscherichia phage naswa\tViruses\t36.194\t54.912\t2.039\t34\t0.6666666666666666\n+399183\tEscherichia phage V5\tViruses\t36.19\t54.693\t2.039\t34\t0.6666666666666666\n+2696408\tEscherichia phage inoa\tViruses\t36.18\t54.663\t1.98\t34\t0.6666666666666666\n+2502307\tEscherichia phage EdH4\tViruses\t36.124\t55.02\t2.02\t34\t0.6666666666666666\n+2233993\tEscherichia phage LL12\tViruses\t36.121\t55.021\t2.02\t34\t0.6666666666666666\n+2763521\tEscherichia phage vb_EcoM_bov10K2\tViruses\t36.052\t54.571\t2.0\t34\t0.6666666666666666\n+2763522\tEscherichia phage vb_EcoM_bov11CS3\tViruses\t36.052\t54.571\t2.0\t34\t0.6666666666666666\n+2763523\tEscherichia phage vb_EcoM_bov22_2\tViruses\t36.052\t54.571\t2.0\t34\t0.6666666666666666\n+2576874\tEscherichia phage vB_EcoM-ECP32\tViruses\t36.009\t54.435\t1.98\t34\t0.6666666666'..b's virescens ascovirus 3f\tViruses\t0.45\t\t0.02\t1\t0.0196078431372549\n+80366\tRachiplusia ou MNPV\tViruses\t0.45\t\t0.098\t1\t0.0196078431372549\n+1296655\tBacillus phage JL\tViruses\t0.45\t40.323\t0.039\t1\t0.0196078431372549\n+1136027\tAnagrapha falcifera multiple nucleopolyhedrovirus\tViruses\t0.45\t\t0.039\t1\t0.0196078431372549\n+1296656\tBacillus phage Shanette\tViruses\t0.45\t40.323\t0.039\t1\t0.0196078431372549\n+207597\tVibrio phage VHML\tViruses\t0.447\t\t0.02\t1\t0.0196078431372549\n+444878\tProchlorococcus phage Syn33\tViruses\t0.447\t\t0.039\t1\t0.0196078431372549\n+330397\tListeria phage B054\tViruses\t0.444\t\t0.039\t1\t0.0196078431372549\n+1960247\tuncultured archaeal virus\tViruses\t0.443\t\t0.02\t1\t0.0196078431372549\n+1772313\tArthrobacter phage Rings\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2725636\tArthrobacter phage Boersma\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2777309\tArthrobacter phage Thunderclap\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+1772316\tArthrobacter phage SorJuana\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2070201\tLactobacillus phage Satyr\tViruses\t0.442\t\t0.02\t1\t0.0196078431372549\n+2599824\tArthrobacter phage Ichor\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2599826\tArthrobacter phage Jaek\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2079431\tLactobacillus phage Maenad\tViruses\t0.442\t\t0.02\t1\t0.0196078431372549\n+1772291\tArthrobacter phage Amigo\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2599839\tArthrobacter phage Yeezus\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+1772292\tArthrobacter phage Anansi\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+1772299\tArthrobacter phage Gorgeous\tViruses\t0.442\t\t0.039\t1\t0.0196078431372549\n+2163987\tAeromonas phage 14AhydR10PP\tViruses\t0.441\t\t0.039\t1\t0.0196078431372549\n+1932904\tAeromonas phage Asp37\tViruses\t0.441\t\t0.039\t1\t0.0196078431372549\n+2163964\tAeromonas phage 85AhydR10PP\tViruses\t0.439\t\t0.039\t1\t0.0196078431372549\n+2163962\tAeromonas phage 13AhydR10PP\tViruses\t0.439\t\t0.039\t1\t0.0196078431372549\n+2506587\tPithovirus LCPAC102\tViruses\t0.438\t\t0.02\t1\t0.0196078431372549\n+1229754\tVibrio phage vB_VpaM_MAR\tViruses\t0.437\t\t0.02\t1\t0.0196078431372549\n+1932899\tAeromonas phage 32\tViruses\t0.437\t\t0.039\t1\t0.0196078431372549\n+2506601\tPithovirus LCDPAC02\tViruses\t0.437\t\t0.02\t1\t0.0196078431372549\n+631719\tVibrio phage VP585\tViruses\t0.437\t\t0.02\t1\t0.0196078431372549\n+2686379\tLactobacillus phage JNU_P1\tViruses\t0.436\t\t0.02\t1\t0.0196078431372549\n+2768133\tArthrobacter phage Tweety19\tViruses\t0.436\t\t0.02\t1\t0.0196078431372549\n+2041487\tPseudomonas phage VW-6S\tViruses\t0.436\t\t0.02\t1\t0.0196078431372549\n+1932903\tAeromonas phage 59.1\tViruses\t0.434\t\t0.039\t1\t0.0196078431372549\n+1970788\tWeissella phage PWc\tViruses\t0.433\t\t0.02\t1\t0.0196078431372549\n+2772077\tcrAssphage cr127_1\tViruses\t0.429\t\t0.02\t1\t0.0196078431372549\n+1881237\tVibrio phage 1.261.O._10N.286.51.A7\tViruses\t0.428\t\t0.059\t1\t0.0196078431372549\n+1881226\tVibrio phage 1.224.A._10N.261.48.B1\tViruses\t0.427\t\t0.059\t1\t0.0196078431372549\n+1881217\tVibrio phage 1.188.A._10N.286.51.A6\tViruses\t0.427\t\t0.059\t1\t0.0196078431372549\n+1881219\tVibrio phage 1.188.C._10N.286.51.A6\tViruses\t0.427\t\t0.059\t1\t0.0196078431372549\n+1881218\tVibrio phage 1.188.B._10N.286.51.A6\tViruses\t0.427\t\t0.059\t1\t0.0196078431372549\n+1881213\tVibrio phage 1.169.O._10N.261.52.B1\tViruses\t0.427\t\t0.059\t1\t0.0196078431372549\n+1225795\tLactobacillus phage ATCC 8014-B2\tViruses\t0.425\t63.333\t0.039\t1\t0.0196078431372549\n+2506589\tPithovirus LCPAC104\tViruses\t0.425\t\t0.02\t1\t0.0196078431372549\n+1503929\tAurantimonas phage AmM-1\tViruses\t0.422\t\t0.02\t1\t0.0196078431372549\n+449720\tCotesia vestalis bracovirus\tViruses\t0.416\t\t0.02\t1\t0.0196078431372549\n+2739752\tSalmonella phage vB_SalM_SA002\tViruses\t0.415\t\t0.157\t1\t0.0196078431372549\n+2656710\tPodoviridae sp. ctLUJ1\tViruses\t0.413\t43.333\t0.078\t1\t0.0196078431372549\n+1092848\tAcinetobacter phage Abp53\tViruses\t0.411\t\t0.02\t1\t0.0196078431372549\n+1572712\tGeobacillus virus E3\tViruses\t0.408\t\t0.039\t1\t0.0196078431372549\n+1846168\tLactobacillus phage P1\tViruses\t0.399\t\t0.02\t1\t0.0196078431372549\n+1928330\tLactobacillus phage P2\tViruses\t0.399\t\t0.02\t1\t0.0196078431372549\n' |
| b |
| diff -r 752228a0f66d -r 90d6580e1c0f test-data/report_h/heatmap_plot.png |
| b |
| Binary file test-data/report_h/heatmap_plot.png has changed |