| Previous changeset 6:632f1a03db92 (2014-07-22) Next changeset 8:0e56e4dac6e7 (2015-02-26) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
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| diff -r 632f1a03db92 -r 8b98841b6b2f tool_dependencies.xml --- a/tool_dependencies.xml Tue Jul 22 11:59:50 2014 -0400 +++ b/tool_dependencies.xml Wed Feb 18 11:32:40 2015 -0500 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="ncurses" version="5.9"> - <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="zlib" version="1.2.8"> <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> @@ -11,14 +11,14 @@ <actions> <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> <action type="set_environment_for_install"> - <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="ncurses" version="5.9" /> </repository> <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="zlib" version="1.2.8" /> </repository> </action> - <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action> + <action type="shell_command">sed -i -e 's/-lcurses/-lncurses/' Makefile</action> <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> <action type="shell_command">make</action> <action type="move_file"> |