| Previous changeset 1:98f71ba0b4a9 (2013-04-23) Next changeset 3:1ce1b6132012 (2013-06-24) |
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Commit message:
Uploaded v0.0.4, preview 1, adds link to Tool Shed entry. |
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modified:
tools/filters/get_orfs_or_cdss.txt tools/filters/get_orfs_or_cdss.xml |
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| diff -r 98f71ba0b4a9 -r 88f002677c63 tools/filters/get_orfs_or_cdss.txt --- a/tools/filters/get_orfs_or_cdss.txt Tue Apr 23 11:47:26 2013 -0400 +++ b/tools/filters/get_orfs_or_cdss.txt Thu May 02 13:12:15 2013 -0400 |
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| @@ -10,6 +10,20 @@ sequences (CDSs) where the first potential start codon is used. See the help text in the XML file for more information. +This tool is available from the Galaxy Tool Shed at: +http://toolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss + + +Automated Installation +====================== + +This should be straightforward, Galaxy should automatically download and install +the tool from the Galaxy Tool Shed, and run the unit tests. + + +Manual Installation +=================== + There are just two files to install: * get_orfs_or_cdss.py (the Python script) @@ -40,6 +54,7 @@ - Use the new <stdio> settings in the XML wrappers to catch errors v0.0.3 - Include unit tests. - Record Python script version when run from Galaxy. +v0.0.4 - Link to Tool Shed added to help text and this documentation. Developers |
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| diff -r 98f71ba0b4a9 -r 88f002677c63 tools/filters/get_orfs_or_cdss.xml --- a/tools/filters/get_orfs_or_cdss.xml Tue Apr 23 11:47:26 2013 -0400 +++ b/tools/filters/get_orfs_or_cdss.xml Thu May 02 13:12:15 2013 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.0.3"> +<tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.0.4"> <description>e.g. to get peptides from ESTs</description> <version_command interpreter="python">get_orfs_or_cdss.py --version</version_command> <command interpreter="python"> @@ -160,5 +160,7 @@ molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +This tool is available to install into other Galaxy Instances via the Galaxy +Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss </help> </tool> |