| Previous changeset 108:96ebf676f6c0 (2014-07-06) Next changeset 110:d7e2a0c0cce9 (2014-07-06) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
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| diff -r 96ebf676f6c0 -r 86bd60bea4d8 tool_dependencies.xml --- a/tool_dependencies.xml Sun Jul 06 02:36:47 2014 -0400 +++ b/tool_dependencies.xml Sun Jul 06 20:37:19 2014 -0400 |
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| @@ -24,10 +24,8 @@ <action type="shell_command">echo "biocLite()" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> <action type="shell_command">echo "install.packages(c(\"stringr\",\"gplots\"),dependencies=T,repos=\"http://cran.us.r-project.org\")" >> $INSTALL_DIR/runme.R</action> - <action type="shell_command">echo "quit(save=\"no\")" >> $INSTALL_DIR/runme.R</action> - <action type="shell_command">echo "PATH=$PATH 1>&2"</action> - <action type="shell_command">echo "R_PATH=$R_PATH 1>&2"</action> - <action type="shell_command">export PATH=$PATH && $R_PATH/R CMD BATCH $INSTALL_DIR/runme.R </action> + <action type="shell_command">echo "quit(save=\"no\")" >> $INSTALL_DIR/runme.R</action> + <action type="shell_command">export PATH=$PATH && R CMD BATCH $INSTALL_DIR/runme.R </action> </actions> </install> <readme>Installs some basic bioc packages for the edgeR wrapper and dependencies graphicsmagick (replaces imagemagick) and ghostscript for compressing R's bloated pdfs |