| Previous changeset 33:d067ee282412 (2014-06-29) Next changeset 35:be178f712bb1 (2014-06-29) |
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Commit message:
Specify filetypes |
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modified:
abundance-dist.xml count-median.xml filter-abund.xml normalize-by-median.xml |
| b |
| diff -r d067ee282412 -r 7611b274ed67 abundance-dist.xml --- a/abundance-dist.xml Sun Jun 29 17:52:24 2014 -0400 +++ b/abundance-dist.xml Sun Jun 29 18:11:02 2014 -0400 |
| b |
| @@ -40,7 +40,7 @@ <tests> <test> <param name="input_sequence_filename" value="test-abund-read-2.fa" /> - <param name="input_counting_table_filename" value="test-abund-read-2.ct" /> + <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" /> <param name="no_zero" value="false" /> <output name="output_histogram_filename"> <assert_contents> @@ -51,7 +51,7 @@ </test> <test> <param name="input_sequence_filename" value="test-abund-read-2.fa" /> - <param name="input_counting_table_filename" value="test-abund-read-2.nobigcount.ct" /> + <param name="input_counting_table_filename" value="test-abund-read-2.nobigcount.ct" ftype="ct" /> <param name="no_zero" value="false" /> <output name="output_histogram_filename"> <assert_contents> |
| b |
| diff -r d067ee282412 -r 7611b274ed67 count-median.xml --- a/count-median.xml Sun Jun 29 17:52:24 2014 -0400 +++ b/count-median.xml Sun Jun 29 18:11:02 2014 -0400 |
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| @@ -39,7 +39,7 @@ <tests> <test> <param name="input_sequence_filename" value="test-abund-read-2.fa" /> - <param name="input_counting_table_filename" value="test-abund-read-2.ct" /> + <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" /> <output name="output_summary_filename"> <assert_contents> <has_line_matching expression="seq 1001 1001.0 0.0 18" /> |
| b |
| diff -r d067ee282412 -r 7611b274ed67 filter-abund.xml --- a/filter-abund.xml Sun Jun 29 17:52:24 2014 -0400 +++ b/filter-abund.xml Sun Jun 29 18:11:02 2014 -0400 |
| b |
| @@ -52,7 +52,7 @@ <tests> <test interactor="api"> <param name="inputs" value="test-abund-read-2.fa" /> - <param name="input_counting_table_filename" value="test-abund-read-2.ct" /> + <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" /> <output name="output"> <discover_dataset name="test-abund-read-2.fa.abundfilt"> <assert_contents> @@ -63,7 +63,7 @@ </test> <test interactor="api"> <param name="input_sequence_filename" value="test-abund-read-2.fa" /> - <param name="input_counting_table_filename" value="test-abund-read-2.ct" /> + <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" /> <param name="cutoff" value="1" /> <output name="output"> <discover_dataset name="test-abund-read-2.fa.abundfilt"> |
| b |
| diff -r d067ee282412 -r 7611b274ed67 normalize-by-median.xml --- a/normalize-by-median.xml Sun Jun 29 17:52:24 2014 -0400 +++ b/normalize-by-median.xml Sun Jun 29 18:11:02 2014 -0400 |
| b |
| @@ -134,7 +134,7 @@ <tests> <test interactor="api"> - <param name="inputs" value="test-abund-read-2.fa" /> + <param name="inputs" value="test-abund-read-2.fa"/> <param name="cutoff" value="1" /> <param name="ksize" value="17" /> <output name="output"> |