| Previous changeset 0:10e3476429b5 (2012-10-05) Next changeset 2:f6ba0f12cca2 (2016-09-28) |
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Commit message:
Add package requirement |
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modified:
gmap.xml gmap_build.xml gsnap.xml iit_store.xml snpindex.xml |
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| diff -r 10e3476429b5 -r 74391fc6e3f2 gmap.xml --- a/gmap.xml Fri Oct 05 13:51:49 2012 -0400 +++ b/gmap.xml Fri Oct 05 13:08:43 2012 -0500 |
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| @@ -1,7 +1,7 @@ <tool id="gmap" name="GMAP" version="2.0.1"> <description>Genomic Mapping and Alignment Program for mRNA and EST sequences</description> <requirements> - <requirement type="binary">gmap</requirement> + <requirement type="package" version="2011-11-30">gmap</requirement> </requirements> <version_string>gmap --version</version_string> <command> |
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| diff -r 10e3476429b5 -r 74391fc6e3f2 gmap_build.xml --- a/gmap_build.xml Fri Oct 05 13:51:49 2012 -0400 +++ b/gmap_build.xml Fri Oct 05 13:08:43 2012 -0500 |
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| @@ -1,7 +1,7 @@ <tool id="gmap_build" name="GMAP Build" version="2.0.0"> <description>a database genome index for GMAP and GSNAP</description> <requirements> - <requirement type="binary">gmap_build</requirement> + <requirement type="package" version="2011-11-30">gmap</requirement> </requirements> <version_string>gmap --version</version_string> <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command> |
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| diff -r 10e3476429b5 -r 74391fc6e3f2 gsnap.xml --- a/gsnap.xml Fri Oct 05 13:51:49 2012 -0400 +++ b/gsnap.xml Fri Oct 05 13:08:43 2012 -0500 |
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| @@ -1,7 +1,7 @@ <tool id="gsnap" name="GSNAP" version="2.0.1"> <description>Genomic Short-read Nucleotide Alignment Program</description> <requirements> - <requirement type="binary">gsnap</requirement> + <requirement type="package" version="2011-11-30">gmap</requirement> </requirements> <version_string>gsnap --version</version_string> <command> |
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| diff -r 10e3476429b5 -r 74391fc6e3f2 iit_store.xml --- a/iit_store.xml Fri Oct 05 13:51:49 2012 -0400 +++ b/iit_store.xml Fri Oct 05 13:08:43 2012 -0500 |
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| @@ -1,7 +1,7 @@ <tool id="gmap_iit_store" name="GMAP IIT" version="2.0.0"> <description>Create a map store for known genes or SNPs</description> <requirements> - <requirement type="binary">iit_store</requirement> + <requirement type="package" version="2011-11-30">gmap</requirement> </requirements> <version_string>iit_store --version</version_string> <command interpreter="command"> /bin/bash $shscript 2> $log </command> |
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| diff -r 10e3476429b5 -r 74391fc6e3f2 snpindex.xml --- a/snpindex.xml Fri Oct 05 13:51:49 2012 -0400 +++ b/snpindex.xml Fri Oct 05 13:08:43 2012 -0500 |
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| @@ -1,7 +1,7 @@ <tool id="gmap_snpindex" name="GMAP SNP Index" version="2.0.0"> <description>build index files for known SNPs</description> <requirements> - <requirement type="binary">snpindex</requirement> + <requirement type="package" version="2011-11-30">gmap</requirement> </requirements> <version_string>snpindex --version</version_string> <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command> |