| Previous changeset 27:f33b89fe9f82 (2017-02-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'53eba8ce731a5f8afd739f9b9c01229b54880e6c\n'-dirty |
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modified:
align_families.xml correct_barcodes.xml dunovo.xml make_families.xml tool_dependencies.xml |
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| diff -r f33b89fe9f82 -r 71b765a4c494 align_families.xml --- a/align_families.xml Sat Feb 18 04:10:19 2017 -0500 +++ b/align_families.xml Sat Feb 18 04:56:38 2017 -0500 |
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| @@ -3,7 +3,7 @@ <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="7.221">mafft</requirement> - <requirement type="package" version="0.6.1">duplex</requirement> + <requirement type="package" version="0.6.2">duplex</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code">align_families.py -p \${GALAXY_SLOTS:-1} '$input' > '$output' |
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| diff -r f33b89fe9f82 -r 71b765a4c494 correct_barcodes.xml --- a/correct_barcodes.xml Sat Feb 18 04:10:19 2017 -0500 +++ b/correct_barcodes.xml Sat Feb 18 04:56:38 2017 -0500 |
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| @@ -5,7 +5,7 @@ <requirement type="package" version="2.1.0">bowtie2</requirement> <requirement type="package" version="0.1.18">samtools</requirement> <requirement type="package" version="1.9">networkx</requirement> - <requirement type="package" version="0.6.1">duplex</requirement> + <requirement type="package" version="0.6.2">duplex</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code">correct-barcodes.sh -d $dist -m $mapq -p $pos '$input' > '$output' |
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| diff -r f33b89fe9f82 -r 71b765a4c494 dunovo.xml --- a/dunovo.xml Sat Feb 18 04:10:19 2017 -0500 +++ b/dunovo.xml Sat Feb 18 04:56:38 2017 -0500 |
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| @@ -2,7 +2,7 @@ <tool id="duplex" name="Du Novo: Make consensus reads" version="0.6"> <description>from duplex sequencing alignments</description> <requirements> - <requirement type="package" version="0.6.1">duplex</requirement> + <requirement type="package" version="0.6.2">duplex</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code">dunovo.sh -r $min_reads -q $qual_thres -F $qual_format '$input' '$dcs1' '$dcs2' |
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| diff -r f33b89fe9f82 -r 71b765a4c494 make_families.xml --- a/make_families.xml Sat Feb 18 04:10:19 2017 -0500 +++ b/make_families.xml Sat Feb 18 04:56:38 2017 -0500 |
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| @@ -2,10 +2,10 @@ <tool id="make_families" name="Du Novo: Make families" version="0.6"> <description>of duplex sequencing reads</description> <requirements> - <requirement type="package" version="0.6.1">duplex</requirement> + <requirement type="package" version="0.6.2">duplex</requirement> </requirements> <!-- TODO: Add dependency on coreutils to get paste? --> - <command detect_errors="exit_code">make-families.sh -v TAG_LEN=$taglen -v INVARIANT=$invariant '$fastq1' '$fastq2' > '$output' + <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' > '$output' </command> <inputs> <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/> |
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| diff -r f33b89fe9f82 -r 71b765a4c494 tool_dependencies.xml --- a/tool_dependencies.xml Sat Feb 18 04:10:19 2017 -0500 +++ b/tool_dependencies.xml Sat Feb 18 04:56:38 2017 -0500 |
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| @@ -12,10 +12,10 @@ <package name="networkx" version="1.9"> <repository changeset_revision="2ca57555a756" name="package_networkx_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="duplex" version="0.6.1"> + <package name="duplex" version="0.6.2"> <install version="1.0"> <actions> - <action sha256sum="f4ee6ef4db6b97bd96bcfb79b18b2ed87b933c8bbbc26073390597da84683ee0" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.6.1.tar.gz</action> + <action sha256sum="04cb2646b5b451add8bf39d1d458e178b16318fe2a9f4958a7fe5c00a6d9a354" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.6.2.tar.gz</action> <action type="shell_command">make</action> <action type="move_directory_files"> <source_directory>.</source_directory> |