Repository 'duplex'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/nick/duplex

Changeset 2:71ace43428ca (2015-11-23)
Previous changeset 1:9bafe0c4bfa0 (2015-11-23) Next changeset 3:13bcc2f459b0 (2015-11-23)
Commit message:
planemo upload commit 801bf168032a13f6405518bddb35a24c9e9a8cd4-dirty
modified:
make_families.xml
b
diff -r 9bafe0c4bfa0 -r 71ace43428ca make_families.xml
--- a/make_families.xml Mon Nov 23 17:46:39 2015 -0500
+++ b/make_families.xml Mon Nov 23 17:57:34 2015 -0500
b
@@ -3,7 +3,7 @@
   <description>from duplex sequencing data</description>
   <command>paste $fastq1 $fastq2
     | paste - - - -
-    | awk -f $DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant
+    | awk -f \$DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant
     | sort
     &gt; $output
   </command>