Repository 'samtools_v1_1'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/yukke/samtools_v1_1

Changeset 7:64a012fe92e3 (2014-11-21)
Previous changeset 6:7a9c736bc13c (2014-11-21) Next changeset 8:3e36d134d1c8 (2014-11-21)
Commit message:
Add flagstat
modified:
samtools_v1_1.xml
b
diff -r 7a9c736bc13c -r 64a012fe92e3 samtools_v1_1.xml
--- a/samtools_v1_1.xml Fri Nov 21 18:04:42 2014 +0900
+++ b/samtools_v1_1.xml Fri Nov 21 18:11:38 2014 +0900
b
@@ -38,8 +38,11 @@
         <param format="bam" name="inputfile" type="data" label="index bam file"/>
       </when>
       <when value="flagstat">
-        <data format="txt" name="outfile" metadata_source="inputfile"/>
+        <data format="txt" name="inputfile" type="data" label="stats of flagstats"/>
       </when>
     </conditional>
   </inputs>
+  <outputs>
+    <data format="txt" name="outfile" metadata_source="inputfile"/>
+  </outputs>
 </tool>