| Previous changeset 13:742d726397b3 (2017-06-26) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mergegffs commit 230f5fe14cc469e56626201a5c377686976d81fc-dirty |
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modified:
mergegffs.py |
| b |
| diff -r 742d726397b3 -r 5e27f44500d6 mergegffs.py --- a/mergegffs.py Mon Jun 26 02:56:32 2017 -0400 +++ b/mergegffs.py Mon Jun 26 03:49:04 2017 -0400 |
| b |
| @@ -25,16 +25,16 @@ db = gffutils.create_db(args.peptides, dbfn=args.database, force=True, keep_order=True,merge_strategy='merge', sort_attribute_values=True) if args.blastp is not None: os.system("convert2gff.py -i "+args.blastp+" -g "+args.peptides+" -p blastp -t protein_match -T -x > blastp.gff") - db=db.update("blastp.gff") + db.update("blastp.gff") if args.signalP is not None: os.system("convert2gff.py -i "+args.signalP+" -g "+args.peptides+" -T -p signalP -t signalpep > signalp.gff") - db=db.update("signalp.gff") + db.update("signalp.gff") if args.tmhmm is not None: os.system("convert2gff.py -i "+args.tmhmm+" -g "+args.peptides+" -T -p tmhmm -t trans_helix > tmhmm.gff") - db=db.update("tmhmm.gff") + db.update("tmhmm.gff") if args.pfam is not None: os.system("pfam2gff.py -i "+args.pfam+" -g "+args.peptides+" -T > PFAM.gff") - db=db.update("PFAM.gff") + db.update("PFAM.gff") with open(args.output, 'w') as fout: for f in db.all_features(): |