| Previous changeset 4:927cc9160762 (2013-09-26) Next changeset 6:42b0c5c270f9 (2013-10-28) |
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Commit message:
Dependency tweaks |
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modified:
omssa.xml repository_dependencies.xml tool_dependencies.xml |
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| diff -r 927cc9160762 -r 3aafd0a91830 omssa.xml --- a/omssa.xml Thu Sep 26 14:48:27 2013 +1000 +++ b/omssa.xml Fri Oct 25 15:19:29 2013 +1100 |
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| @@ -1,8 +1,10 @@ <tool id="proteomics_search_omssa_1" name="OMSSA MSMS Search" version="1.0.1"> <requirements> - <requirement type="package" version="2.1.9">protk_omssa</requirement> - </requirements> + <requirement type="package" version="1.2.4">protk</requirement> + <requirement type="package" version="2.1.9">omssa</requirement> + <requirement type="package" version="2.2.27">blast+</requirement> + </requirements> <description>Run an OMSSA MS/MS Search</description> |
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| diff -r 927cc9160762 -r 3aafd0a91830 repository_dependencies.xml --- a/repository_dependencies.xml Thu Sep 26 14:48:27 2013 +1000 +++ b/repository_dependencies.xml Fri Oct 25 15:19:29 2013 +1100 |
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| @@ -1,4 +1,10 @@ <?xml version="1.0"?> -<repositories description="Proteomics datatypes"> +<repositories description="Proteomics datatypes, omssa and blast executables"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b"/> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_protk_1_2_4" owner="bgruening" changeset_revision="e129907310c2"/> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_omssa_2_1_9" owner="iracooke" changeset_revision="a71ce3af685a"/> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_blast_plus_2_2_27" owner="iuc" changeset_revision="eab09bc4d63e"/> + + </repositories> |
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| diff -r 927cc9160762 -r 3aafd0a91830 tool_dependencies.xml --- a/tool_dependencies.xml Thu Sep 26 14:48:27 2013 +1000 +++ b/tool_dependencies.xml Fri Oct 25 15:19:29 2013 +1100 |
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| @@ -1,16 +1,15 @@ <?xml version="1.0"?> <tool_dependency> - <package name="protk_omssa" version="2.1.9"> - <install version="1.0"> - <actions> - <action type="setup_rvm" ruby="1.9.3-p448"> - <gem version="1.2.4">protk</gem> - </action> - <action type="shell_command">protk_setup.rb blast</action> - <action type="shell_command">protk_setup.rb omssa</action> - </actions> - </install> - - <readme>Installer for omssa using the protk ruby gem</readme> - </package> + <package name="omssa" version="2.1.9"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_omssa_2_1_9" owner="iracooke" changeset_revision="a71ce3af685a"/> + </package> + + <package name="protk" version="1.2.4"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_protk_1_2_4" owner="bgruening" changeset_revision="e129907310c2"/> + </package> + + <package name="blast+" version="2.2.27"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_blast_plus_2_2_27" owner="iuc" changeset_revision="eab09bc4d63e"/> + </package> + </tool_dependency> |