Repository 'differential_count_models'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/fubar/differential_count_models

Changeset 78:340d5460f3ff (2014-02-26)
Previous changeset 77:4a2e7a9725b2 (2014-02-25) Next changeset 79:17d82de7a2d9 (2014-02-26)
Commit message:
Uploaded
modified:
rgedgeRpaired_nocamera.xml
b
diff -r 4a2e7a9725b2 -r 340d5460f3ff rgedgeRpaired_nocamera.xml
--- a/rgedgeRpaired_nocamera.xml Tue Feb 25 23:54:59 2014 -0500
+++ b/rgedgeRpaired_nocamera.xml Wed Feb 26 00:15:42 2014 -0500
b
@@ -817,7 +817,7 @@
 out_edgeR = F
 out_DESeq2 = F
 out_VOOM = "$out_VOOM"
-edgeR_robust_meth = $edgeR_robust # control robust deviance options
+edgeR_robust_meth = "ordinary" # control robust deviance options
 doDESeq2 = $DESeq2.doDESeq2 # make these T or F
 doVoom = $doVoom
 doCamera = F
@@ -837,6 +837,7 @@
 #if $edgeR.doedgeR == "T":
   out_edgeR = "$out_edgeR"
   edgeR_priordf = $edgeR.edgeR_priordf  
+  edgeR_robust_meth = "$edgeR.edgeR_robust"
 #end if