| Previous changeset 52:3d65329a491d (2014-08-05) Next changeset 54:2c90cd2ee27b (2014-08-06) |
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Commit message:
Add citations |
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modified:
abundance-dist-single.xml abundance-dist.xml do-partition.xml extract-partitions.xml filter-abund.xml filter-below-abund.xml macros.xml normalize-by-median.xml |
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| diff -r 3d65329a491d -r 2c03c19808c5 abundance-dist-single.xml --- a/abundance-dist-single.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/abundance-dist-single.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -91,7 +91,10 @@ </test> </tests> - + <citations> + <expand macro="software-citation" /> + <expand macro="counting-citation" /> + </citations> <!-- [OPTIONAL] Help displayed in Galaxy --> <!-- <help> |
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| diff -r 3d65329a491d -r 2c03c19808c5 abundance-dist.xml --- a/abundance-dist.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/abundance-dist.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -61,7 +61,10 @@ </output> </test> </tests> - + <citations> + <expand macro="software-citation" /> + <expand macro="counting-citation" /> + </citations> <!-- [OPTIONAL] Help displayed in Galaxy --> <!-- <help> |
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| diff -r 3d65329a491d -r 2c03c19808c5 do-partition.xml --- a/do-partition.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/do-partition.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -100,6 +100,10 @@ </tests> --> + <citations> + <expand macro="software-citation" /> + <expand macro="graph-citation" /> + </citations> <!-- [OPTIONAL] Help displayed in Galaxy --> <!-- <help> |
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| diff -r 3d65329a491d -r 2c03c19808c5 extract-partitions.xml --- a/extract-partitions.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/extract-partitions.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -67,6 +67,10 @@ </test> </tests> + <citations> + <expand macro="software-citation" /> + <expand macro="graph-citation" /> + </citations> <!-- [OPTIONAL] Help displayed in Galaxy --> <!-- <help> |
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| diff -r 3d65329a491d -r 2c03c19808c5 filter-abund.xml --- a/filter-abund.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/filter-abund.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -77,6 +77,10 @@ </output> </test> </tests> + <citations> + <expand macro="software-citation" /> + <expand macro="counting-citation" /> + </citations> <!-- [OPTIONAL] ReST Help displayed in Galaxy --> <!-- <help> |
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| diff -r 3d65329a491d -r 2c03c19808c5 filter-below-abund.xml --- a/filter-below-abund.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/filter-below-abund.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -56,6 +56,10 @@ </output> </test> </tests> --> + <citations> + <expand macro="software-citation" /> + <expand macro="counting-citation" /> + </citations> <!-- [OPTIONAL] ReST Help displayed in Galaxy --> <!-- <help> |
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| diff -r 3d65329a491d -r 2c03c19808c5 macros.xml --- a/macros.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/macros.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -119,4 +119,16 @@ checked="true" help="Output zero count bins" /> </xml> -`</macros> + <xml name="software_citation" type="doi">10.6084/m9.figshare.979190</xml> + <xml name="diginorm-citation" type="bibtex">@misc{diginorm, + Author = {Brown, C Titus and Howe, Adina and Zhang, Qingpeng and Pyrkosz, +Alexis B and Brom, Timothy H}, + Title = {A Reference-Free Algorithm for Computational Normalization of +Shotgun Sequencing Data}, + Year = {2012}, + Eprint = {arXiv:1203.4802}, +}</xml> + <xml name="graph-citation" type="doi">10.1073/pnas.1121464109</xml> + <xml name="counting-citation" type="doi">10.1371/journal.pone.0101271</xml> + +</macros> |
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| diff -r 3d65329a491d -r 2c03c19808c5 normalize-by-median.xml --- a/normalize-by-median.xml Tue Aug 05 17:30:32 2014 -0400 +++ b/normalize-by-median.xml Wed Aug 06 14:50:51 2014 -0400 |
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| @@ -124,7 +124,10 @@ </test> </tests> - + <citations> + <expand macro="software-citation" /> + <expand macro="diginorm-citation" /> + </citations> <!-- [OPTIONAL] Help displayed in Galaxy --> <!-- <help> |