| Previous changeset 20:036e4151b27a (2017-04-21) Next changeset 22:992b1ff45bb0 (2017-05-10) |
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Commit message:
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 7cf7d2e3fc5480fbe1a463e8a876e54c5c858dbe-dirty |
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modified:
tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.xml |
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| diff -r 036e4151b27a -r 128f5379d89c tools/get_orfs_or_cdss/README.rst --- a/tools/get_orfs_or_cdss/README.rst Fri Apr 21 12:02:44 2017 -0400 +++ b/tools/get_orfs_or_cdss/README.rst Wed May 10 11:52:24 2017 -0400 |
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| @@ -77,7 +77,9 @@ - Added NCBI genetic code table 24, Pterobranchia Mitochondrial. v0.1.1 - Reorder XML elements (internal change only). v0.2.0 - Tool now also outputs GFF3 formatted calls (Eric Rasche). -v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda +v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. + - Added NCBI genetic code table 24, Candidate Division SR1 and + Gracilibacteria. ======= ====================================================================== |
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| diff -r 036e4151b27a -r 128f5379d89c tools/get_orfs_or_cdss/get_orfs_or_cdss.xml --- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml Fri Apr 21 12:02:44 2017 -0400 +++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.xml Wed May 10 11:52:24 2017 -0400 |
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| @@ -33,6 +33,15 @@ <option value="22">22. Scenedesmus obliquus</option> <option value="23">23. Thraustochytrium Mitochondrial</option> <option value="24">24. Pterobranchia Mitochondrial</option> + <option value="25">25. Candidate Division SR1 and Gracilibacteria</option> + <!-- TODO, these are not in Biopython 1.67 + <option value="26">26. Pachysolen tannophilus Nuclear</option> + <option value="26">27. Karyorelict Nuclear</option> + <option value="26">28. Condylostoma Nuclear</option> + <option value="26">29. Mesodinium Nuclear</option> + <option value="26">30. Peritrich Nuclear</option> + <option value="26">31. Blastocrithidia Nuclear</option> + --> </param> <param name="ftype" type="select" value="True" label="Look for ORFs or CDSs"> <option value="ORF">Look for ORFs (check for stop codons only, ignore start codons)</option> |