Repository 'khmer'
hg clone https://testtoolshed.g2.bx.psu.edu/repos/crusoe/khmer

Changeset 50:0887e13644b8 (2014-07-12)
Previous changeset 49:25a176335337 (2014-07-12) Next changeset 51:3357f097d3c9 (2014-07-12)
Commit message:
more updates
modified:
filter-abund.xml
filter-below-abund.xml
b
diff -r 25a176335337 -r 0887e13644b8 filter-abund.xml
--- a/filter-abund.xml Sat Jul 12 16:41:53 2014 -0400
+++ b/filter-abund.xml Sat Jul 12 17:03:04 2014 -0400
b
@@ -57,11 +57,11 @@
                         <param name="inputs" value="test-abund-read-2.fa" />
                         <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" />
                         <output name="output">
- <discover_dataset name="test-abund-read-2.fa.abundfilt">
+ <!-- <discover_dataset name="test-abund-read-2.fa.abundfilt"> -->
                                  <assert_contents>
                                          <has_text text="GGTTGACGGGGCTCAGGG" />
                                  </assert_contents>
- </discover_dataset>
+ <!-- </discover_dataset> -->
                         </output>
                 </test>
                 <test interactor="api">
@@ -69,11 +69,11 @@
                         <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" />
  <param name="cutoff" value="1" />
                         <output name="output">
- <discover_dataset name="test-abund-read-2.fa.abundfilt">
+ <!-- <discover_dataset name="test-abund-read-2.fa.abundfilt"> -->
                                  <assert_contents>
                                          <has_text text="GGTTGACGGGGCTCAGGG" />
                                  </assert_contents>
- </discover_dataset>
+ <!-- </discover_dataset> -->
                         </output>
                 </test>
         </tests> 
b
diff -r 25a176335337 -r 0887e13644b8 filter-below-abund.xml
--- a/filter-below-abund.xml Sat Jul 12 16:41:53 2014 -0400
+++ b/filter-below-abund.xml Sat Jul 12 17:03:04 2014 -0400
b
@@ -15,7 +15,7 @@
  <command>
 mkdir output; cd output;
 @BINARY@
-$countingtable_to_load
+$input_counting_table_filename
 #for input in inputs
  $input
 #end for